RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 A0A1W2PRE2 83 aa11.29□□□□□ -0.6
CPSF1-207ENST00000531727 LRCOL1A6NCL2 159 aa11.29□□□□□ -0.6
CPSF1-207ENST00000531727 GIPP09681 153 aaPredicted RBP11.29□□□□□ -0.6
CPSF1-207ENST00000531727 MGST1P10620 155 aaKnown RBP11.29□□□□□ -0.6
CPSF1-207ENST00000531727 GCSHP23434 173 aa11.29□□□□□ -0.6
CPSF1-207ENST00000531727 LELP1Q5T871 98 aa11.29□□□□□ -0.6
CPSF1-207ENST00000531727 VPS13BQ7Z7G8 4022 aa11.29□□□□□ -0.6
CPSF1-207ENST00000531727 RPL7L1Q6DKI1 246 aaKnown RBP11.28□□□□□ -0.6
CPSF1-207ENST00000531727 INO80EQ8NBZ0 244 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-207ENST00000531727 GTSF1LQ9H1H1 148 aa11.28□□□□□ -0.6
CPSF1-207ENST00000531727 BORCS7-ASMTA0A0B4J1R7 106 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 IGKV3D-20A0A0C4DH25 116 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 RNF222A6NCQ9 220 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 ZNF726P1Q15940 193 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 ATP6V0E2Q8NHE4 81 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 LINC00479Q96M42 142 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 Q9HAA7 133 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 ARL2-SNX15V9GYD0 113 aa11.27□□□□□ -0.61
CPSF1-207ENST00000531727 TRAV34A0A0B4J273 112 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 CTXND1A0A1B0GTU2 59 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 IGHV3-30P01768 117 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 IGHV3-33P01772 117 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 IGHV3-30-3P0DP02 117 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 IGHV3-30-5P0DP03 117 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 S100A4P26447 101 aaKnown RBP11.26□□□□□ -0.61
CPSF1-207ENST00000531727 PIK3CD-AS1Q5SR53 167 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 NTN5Q8WTR8 489 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-207ENST00000531727 PARLQ9H300 379 aa11.26□□□□□ -0.61
CPSF1-207ENST00000531727 IGLV5-52A0A0A0MRZ9 124 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 FABP5P3A8MUU1 101 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 A8MWV9 139 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 IFNA7P01567 189 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 Q5VSD8 79 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 ZFP2Q6ZN57 461 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 Q6ZSN1 163 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 FRZBQ92765 325 aa11.25□□□□□ -0.61
CPSF1-207ENST00000531727 FXYD6-FXYD2A0A087WZ82 144 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 PEX7O00628 323 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 INAFM2P0DMQ5 153 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 ASIPP42127 132 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 UBE2G2P60604 165 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 LAGE3Q14657 143 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 LGALSLQ3ZCW2 172 aaPredicted RBP11.24□□□□□ -0.61
CPSF1-207ENST00000531727 Q86TA4 180 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 Q8N814 137 aa11.24□□□□□ -0.61
CPSF1-207ENST00000531727 LINC00694P0DN24 101 aa11.23□□□□□ -0.61
CPSF1-207ENST00000531727 NKX6-2Q9C056 277 aaPredicted RBP11.23□□□□□ -0.61
CPSF1-207ENST00000531727 IL36BQ9NZH7 164 aa11.23□□□□□ -0.61
CPSF1-207ENST00000531727 GAGE12JA6NER3 117 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 FAM74A7A6NL05 159 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 B4DEV8 164 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 FGF8P55075 233 aaPredicted RBP11.22□□□□□ -0.61
CPSF1-207ENST00000531727 GAGE1Q13065 139 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 GAGE4Q13068 117 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 GAGE5Q13069 117 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 GAGE13Q4V321 117 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 UFSP1Q6NVU6 142 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 OR2T35Q8NGX2 323 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 HIST1H2BAQ96A08 127 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 TMEM70Q9BUB7 260 aa11.22□□□□□ -0.61
CPSF1-207ENST00000531727 DNLZQ5SXM8 178 aa11.21□□□□□ -0.61
CPSF1-207ENST00000531727 AKR1C8PQ5T2L2 129 aa11.21□□□□□ -0.61
CPSF1-207ENST00000531727 TM2D2Q9BX73 214 aa11.21□□□□□ -0.61
CPSF1-207ENST00000531727 JPT2Q9H910 190 aa11.21□□□□□ -0.61
CPSF1-207ENST00000531727 KRBOX1C9JBD0 128 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 H3BVH4 76 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 SMR3BP02814 79 aaPredicted RBP11.2□□□□□ -0.62
CPSF1-207ENST00000531727 CRIP1P50238 77 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 HAMPP81172 84 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 DMRTA1Q5VZB9 504 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 COX8CQ7Z4L0 72 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 Q8N3U1 123 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 SYT8Q8NBV8 401 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 ZC2HC1AQ96GY0 325 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 SAMD10Q9BYL1 202 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 Q9UF83 564 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 ZFP30Q9Y2G7 519 aa11.2□□□□□ -0.62
CPSF1-207ENST00000531727 RHODO00212 210 aa11.19□□□□□ -0.62
CPSF1-207ENST00000531727 SH2D1AO60880 128 aa11.19□□□□□ -0.62
CPSF1-207ENST00000531727 ARMS2P0C7Q2 107 aa11.19□□□□□ -0.62
CPSF1-207ENST00000531727 C14orf178Q8N769 122 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-207ENST00000531727 FMC1Q96HJ9 113 aa11.19□□□□□ -0.62
CPSF1-207ENST00000531727 FAT1Q14517 4588 aa11.19□□□□□ -0.62
CPSF1-207ENST00000531727 A0A087WWC5 75 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 TRAV8-3A0A0A6YYJ7 113 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 MAP1LC3B2A6NCE7 125 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 G3V3Q6 166 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 M0R036 132 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 FAM162BQ5T6X4 162 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 OR11H4Q8NGC9 324 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 MAP1LC3BQ9GZQ8 125 aa11.18□□□□□ -0.62
CPSF1-207ENST00000531727 GRIFINA4D1Z8 144 aa11.17□□□□□ -0.62
CPSF1-207ENST00000531727 FAM229AH3BQW9 127 aa11.17□□□□□ -0.62
CPSF1-207ENST00000531727 UBE2G1P62253 170 aa11.17□□□□□ -0.62
CPSF1-207ENST00000531727 WFDC2Q14508 124 aa11.17□□□□□ -0.62
CPSF1-207ENST00000531727 DAZ4Q86SG3 579 aaKnown RBP11.17□□□□□ -0.62
CPSF1-207ENST00000531727 DAZ3Q9NR90 486 aaKnown RBP11.17□□□□□ -0.62
CPSF1-207ENST00000531727 CYTL1Q9NRR1 136 aa11.17□□□□□ -0.62
CPSF1-207ENST00000531727 TRBV6-1A0A0K0K1D8 114 aa11.16□□□□□ -0.62
CPSF1-207ENST00000531727 FHITP49789 147 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms