RNA–Protein interactions for RNA: ENST00000515459.5

LMNA-223, Transcript of lamin A/C, human

TSL 5

Gene LMNA, Length 757 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMNA-223	ENST00000515459	C11orf21	Q9P2W6	132 aa		10.31	□□□□□ -0.76
LMNA-223	ENST00000515459	IGKV2D-24	A0A075B6R9	120 aa		10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	FAM240B	A0A1B0GVZ2	78 aa		10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	IGLV2-8	P01709	118 aa		10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	ZNF80	P51504	273 aa	Predicted RBP	10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	ZFP2	Q6ZN57	461 aa		10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	CYB561D1	Q8N8Q1	229 aa		10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	SCGB1C1	Q8TD33	95 aa		10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	URGCP-MRPS24	S4R325	110 aa		10.3	□□□□□ -0.76
LMNA-223	ENST00000515459	HMCN2	Q8NDA2	5059 aa		10.29	□□□□□ -0.76
LMNA-223	ENST00000515459	SEC11B	P0C7V7	166 aa		10.29	□□□□□ -0.76
LMNA-223	ENST00000515459	RNASE3	P12724	160 aa	Known RBP	10.29	□□□□□ -0.76
LMNA-223	ENST00000515459	TMEM75	Q8N9X5	138 aa		10.29	□□□□□ -0.76
LMNA-223	ENST00000515459	PARL	Q9H300	379 aa		10.29	□□□□□ -0.76
LMNA-223	ENST00000515459	SERTM2	A0A1B0GWG4	89 aa		10.28	□□□□□ -0.76
LMNA-223	ENST00000515459		A0A1W2PPV4	95 aa		10.28	□□□□□ -0.76
LMNA-223	ENST00000515459		A8MWV9	139 aa		10.28	□□□□□ -0.76
LMNA-223	ENST00000515459	GCG	P01275	180 aa		10.28	□□□□□ -0.76
LMNA-223	ENST00000515459	CYCS	P99999	105 aa	Known RBP	10.28	□□□□□ -0.76
LMNA-223	ENST00000515459	OR2T35	Q8NGX2	323 aa		10.28	□□□□□ -0.76
LMNA-223	ENST00000515459	UBR4	Q5T4S7	5183 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459		K7EQM0	130 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	FGF8	P55075	233 aa	Predicted RBP	10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	ZFP69	Q49AA0	526 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	NIT1	Q86X76	327 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	DNAJC30	Q96LL9	226 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	CCDC32	Q9BV29	185 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	NDUFA13	Q9P0J0	144 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	KLK12	Q9UKR0	248 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	HSPB11	Q9Y547	144 aa		10.27	□□□□□ -0.77
LMNA-223	ENST00000515459	IGLV2-11	P01706	119 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	TCRA	P04437	139 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	SMUG1	Q53HV7	270 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	MZT2B	Q6NZ67	158 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	LINC00479	Q96M42	142 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	SAMD10	Q9BYL1	202 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	SMIM3	Q9BZL3	60 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459		Q9UF83	564 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	PSG8	Q9UQ74	426 aa		10.26	□□□□□ -0.77
LMNA-223	ENST00000515459	HMGB3	O15347	200 aa	Known RBP	10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	RPL37A	P61513	92 aa	Known RBP	10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	LGALSL	Q3ZCW2	172 aa	Predicted RBP	10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	PIK3CD-AS1	Q5SR53	167 aa		10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	C5orf17	Q8NAS9	161 aa		10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	OR10G9	Q8NGN4	311 aa		10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	PPP1R1C	Q8WVI7	109 aa		10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	UBE2W	Q96B02	151 aa		10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	FAT3	Q8TDW7	4589 aa		10.25	□□□□□ -0.77
LMNA-223	ENST00000515459	S100A4	P26447	101 aa	Known RBP	10.24	□□□□□ -0.77
LMNA-223	ENST00000515459	RAB2A	P61019	212 aa		10.24	□□□□□ -0.77
LMNA-223	ENST00000515459	FLI1	Q01543	452 aa	Predicted RBP	10.24	□□□□□ -0.77
LMNA-223	ENST00000515459	ELOB	Q15370	118 aa		10.24	□□□□□ -0.77
LMNA-223	ENST00000515459	C14orf178	Q8N769	122 aa	Predicted RBP	10.24	□□□□□ -0.77
LMNA-223	ENST00000515459		A0A087WX48	190 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	ARL14EPL	P0DKL9	152 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	RPL12	P30050	165 aa	Known RBP	10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	C14orf177	Q52M58	125 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	UFSP1	Q6NVU6	142 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	ATRAID	Q6UW56	229 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	PRNT	Q86SH4	94 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	OR10G7	Q8NGN6	311 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	CHCHD7	Q9BUK0	85 aa		10.23	□□□□□ -0.77
LMNA-223	ENST00000515459	IGKV3D-20	A0A0C4DH25	116 aa		10.22	□□□□□ -0.77
LMNA-223	ENST00000515459	MPC2	O95563	127 aa		10.22	□□□□□ -0.77
LMNA-223	ENST00000515459	PET100	P0DJ07	73 aa		10.22	□□□□□ -0.77
LMNA-223	ENST00000515459	H2BFS	P57053	126 aa		10.22	□□□□□ -0.77
LMNA-223	ENST00000515459	SAPCD1	Q5SSQ6	148 aa		10.22	□□□□□ -0.77
LMNA-223	ENST00000515459	KCNIP4	Q6PIL6	250 aa		10.22	□□□□□ -0.77
LMNA-223	ENST00000515459	JPT2	Q9H910	190 aa		10.22	□□□□□ -0.77
LMNA-223	ENST00000515459	ASIP	P42127	132 aa		10.21	□□□□□ -0.77
LMNA-223	ENST00000515459	HNRNPA3	P51991	378 aa	Known RBP	10.21	□□□□□ -0.77
LMNA-223	ENST00000515459		Q0VG73	95 aa		10.21	□□□□□ -0.77
LMNA-223	ENST00000515459	DAZAP1	Q96EP5	407 aa	Known RBP	10.21	□□□□□ -0.77
LMNA-223	ENST00000515459	RHOD	O00212	210 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	STAG3L2	P0CL84	134 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	STAG3L3	P0CL85	134 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	CDC34	P49427	236 aa	Predicted RBP	10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	SUMO1	P63165	101 aa	Known RBP	10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	DMRTA1	Q5VZB9	504 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	OR2G3	Q8NGZ4	309 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	ENKUR	Q8TC29	256 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	C1orf43	Q9BWL3	253 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	WFDC1	Q9HC57	220 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	IL36B	Q9NZH7	164 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	EPDR1	Q9UM22	224 aa		10.2	□□□□□ -0.78
LMNA-223	ENST00000515459	FAM74A4	Q5TZK3	123 aa		10.19	□□□□□ -0.78
LMNA-223	ENST00000515459	SUN5	Q8TC36	379 aa		10.19	□□□□□ -0.78
LMNA-223	ENST00000515459	PKHD1L1	Q86WI1	4243 aa		10.18	□□□□□ -0.78
LMNA-223	ENST00000515459	FABP5P3	A8MUU1	101 aa		10.18	□□□□□ -0.78
LMNA-223	ENST00000515459	GCHFR	P30047	84 aa		10.18	□□□□□ -0.78
LMNA-223	ENST00000515459		H3BVH4	76 aa		10.17	□□□□□ -0.78
LMNA-223	ENST00000515459	RAB24	Q969Q5	203 aa		10.17	□□□□□ -0.78
LMNA-223	ENST00000515459		B4DEV8	164 aa		10.16	□□□□□ -0.78
LMNA-223	ENST00000515459	CRP	P02741	224 aa		10.16	□□□□□ -0.78
LMNA-223	ENST00000515459	MT1HL1	P0DM35	61 aa		10.16	□□□□□ -0.78
LMNA-223	ENST00000515459	ENHO	Q6UWT2	76 aa		10.16	□□□□□ -0.78
LMNA-223	ENST00000515459	OR11H4	Q8NGC9	324 aa		10.16	□□□□□ -0.78
LMNA-223	ENST00000515459	BATF3	Q9NR55	127 aa		10.16	□□□□□ -0.78
LMNA-223	ENST00000515459	TMEM167B	Q9NRX6	74 aa		10.16	□□□□□ -0.78
LMNA-223	ENST00000515459	ARL2-SNX15	V9GYD0	113 aa		10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms