RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TEN1Q86WV5 123 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 FAM110DQ8TAY7 271 aaPredicted RBP10.14□□□□□ -0.79
USP40-214ENST00000483519 RASL10AQ92737 203 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 ATMQ13315 3056 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 BOD1L1Q8NFC6 3051 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 TRBV20-1A0A075B6N2 111 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 PRSS29PA6NIE9 313 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 COX6B1P14854 86 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 METTL26Q96S19 204 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 DPH3P1Q9H4G8 78 aa10.14□□□□□ -0.79
USP40-214ENST00000483519 J3QKU1 62 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 HERVK_113P61574 105 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 EBI3Q14213 229 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 VMO1Q7Z5L0 202 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 LENEPQ9Y5L5 61 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 KALRNO60229 2985 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 CENPVL3A0A0U1RRI6 287 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 CLPSL1A2RUU4 121 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 MT-ATP8P03928 68 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 PLEKHB2Q96CS7 222 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 TIMD4Q96H15 378 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 M0R381 172 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 CCL21O00585 134 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 PPP1R17O96001 155 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 CD7P09564 240 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 PLA2G2AP14555 144 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 PAPPA-AS1Q5QFB9 102 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 ZFP2Q6ZN57 461 aa10.13□□□□□ -0.79
USP40-214ENST00000483519 NBASA2RRP1 2371 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 XGP55808 180 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 SFTA2Q6UW10 78 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 IGHV3OR16-13A0A075B7E8 117 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 IGHV3-74A0A0B4J1X5 117 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 FHL3Q13643 280 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 ECSCRQ19T08 205 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 MINOS1Q5TGZ0 78 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 Q6ZQT7 251 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 NDUFA11Q86Y39 141 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 RPL39LQ96EH5 51 aaKnown RBP10.12□□□□□ -0.79
USP40-214ENST00000483519 YAE1D1Q9NRH1 226 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 MINOS1-NBL1R4GNA1 71 aa10.12□□□□□ -0.79
USP40-214ENST00000483519 A8MWV9 139 aa10.11□□□□□ -0.79
USP40-214ENST00000483519 S100A4P26447 101 aaKnown RBP10.11□□□□□ -0.79
USP40-214ENST00000483519 KLK9Q2XQG4 91 aa10.11□□□□□ -0.79
USP40-214ENST00000483519 CLEC19AQ6UXS0 136 aa10.11□□□□□ -0.79
USP40-214ENST00000483519 Q8N9W7 124 aa10.11□□□□□ -0.79
USP40-214ENST00000483519 C16orf92Q96LL3 132 aa10.11□□□□□ -0.79
USP40-214ENST00000483519 KLK9Q9UKQ9 250 aa10.11□□□□□ -0.79
USP40-214ENST00000483519 ZNF462Q96JM2 2506 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 MGPP08493 103 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 ASIPP42127 132 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 C14orf178Q8N769 122 aaPredicted RBP10.1□□□□□ -0.79
USP40-214ENST00000483519 PTH2Q96A98 100 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 EEF1AKMT3Q96AZ1 226 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 CARD19Q96LW7 228 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 PHLDA3Q9Y5J5 127 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 TRAV21A0A0B4J279 112 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 IGHV1-69DA0A0B4J2H0 117 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 PRR9Q5T870 116 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 C9orf139Q6ZV77 190 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 SBSPONQ8IVN8 264 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 CCDC140Q96MF4 163 aa10.1□□□□□ -0.79
USP40-214ENST00000483519 IGHV3-49A0A0A0MS15 119 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 A0A0J9YY99 117 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 TCL1BO95988 128 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 ZNF688P0C7X2 276 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 KLHL30-AS1Q8NEE0 82 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 ERG28Q9UKR5 140 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 RNF223E7ERA6 249 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 TMEM262E9PQX1 116 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 MED14OSP0DP75 135 aa10.09□□□□□ -0.79
USP40-214ENST00000483519 TRBV7-1A0A0A6YYK4 115 aa10.08□□□□□ -0.8
USP40-214ENST00000483519 LINC00477Q96M19 166 aa10.08□□□□□ -0.8
USP40-214ENST00000483519 PCNX1Q96RV3 2341 aa10.08□□□□□ -0.8
USP40-214ENST00000483519 C11orf86A6NJI1 115 aa10.08□□□□□ -0.8
USP40-214ENST00000483519 ATP6V0E1O15342 81 aa10.08□□□□□ -0.8
USP40-214ENST00000483519 C10orf126Q8N4M7 172 aa10.08□□□□□ -0.8
USP40-214ENST00000483519 U3KQE9 123 aa10.08□□□□□ -0.8
USP40-214ENST00000483519 CFAP46Q8IYW2 2715 aa10.07□□□□□ -0.8
USP40-214ENST00000483519 IGLV4-69A0A075B6H9 119 aa10.07□□□□□ -0.8
USP40-214ENST00000483519 DUSP14O95147 198 aaKnown RBP10.07□□□□□ -0.8
USP40-214ENST00000483519 CRYGDP07320 174 aa10.07□□□□□ -0.8
USP40-214ENST00000483519 A0A1W2PRX2 142 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 LY6HO94772 140 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 IGHV3-30P01768 117 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 CFC1BP0CG36 223 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 CFC1P0CG37 223 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 SCGB1C2P0DMR2 95 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 IGHV3-30-5P0DP03 117 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 PMVKQ15126 192 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 ZFAND2AQ8N6M9 145 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 OR10J6PQ8NGY7 276 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 ANKRD29Q8N6D5 301 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 LINC01560Q8TB33 94 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 ITLN2Q8WWU7 325 aaPredicted RBP10.06□□□□□ -0.8
USP40-214ENST00000483519 ANAPC13Q9BS18 74 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 PRO1854Q9UHT4 67 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 ARHGAP32A7KAX9 2087 aa10.06□□□□□ -0.8
USP40-214ENST00000483519 RPL32P62910 135 aaKnown RBP10.06□□□□□ -0.8
USP40-214ENST00000483519 ZFAND6Q6FIF0 208 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 318 ms