RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 GFRA4Q9GZZ7 299 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 PTTG1IPP53801 180 aa10.42□□□□□ -0.74
CCDC88A-211ENST00000471947 TEX43Q6ZNM6 134 aa10.41□□□□□ -0.74
CCDC88A-211ENST00000471947 C2orf70A6NJV1 201 aa10.41□□□□□ -0.74
CCDC88A-211ENST00000471947 GCSHP23434 173 aa10.41□□□□□ -0.74
CCDC88A-211ENST00000471947 Q6AWC8 147 aa10.41□□□□□ -0.74
CCDC88A-211ENST00000471947 RASL11AQ6T310 242 aa10.41□□□□□ -0.74
CCDC88A-211ENST00000471947 MEGF9Q9H1U4 602 aa10.4□□□□□ -0.74
CCDC88A-211ENST00000471947 CFHR3Q02985 330 aa10.4□□□□□ -0.74
CCDC88A-211ENST00000471947 RNASE13Q5GAN3 156 aaKnown RBP10.4□□□□□ -0.74
CCDC88A-211ENST00000471947 OR2K2Q8NGT1 345 aa10.4□□□□□ -0.74
CCDC88A-211ENST00000471947 RPL35AP18077 110 aaKnown RBP10.4□□□□□ -0.75
CCDC88A-211ENST00000471947 RNF151Q2KHN1 245 aa10.4□□□□□ -0.75
CCDC88A-211ENST00000471947 ARL6IP6Q8N6S5 226 aa10.4□□□□□ -0.75
CCDC88A-211ENST00000471947 LINC01587Q99440 93 aa10.4□□□□□ -0.75
CCDC88A-211ENST00000471947 MDFICQ9P1T7 246 aa10.4□□□□□ -0.75
CCDC88A-211ENST00000471947 IGKV3OR2-268A0A0C4DH90 116 aa10.39□□□□□ -0.75
CCDC88A-211ENST00000471947 DSCR9P59020 149 aa10.39□□□□□ -0.75
CCDC88A-211ENST00000471947 CHCHD1Q96BP2 118 aaKnown RBP10.39□□□□□ -0.75
CCDC88A-211ENST00000471947 SCGB3A1Q96QR1 104 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 ANKRD39Q53RE8 183 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 COL5A1-AS1Q5SY13 56 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 PCP2Q8IVA1 136 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 SMIM12Q96EX1 92 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 ZNF747Q9BV97 191 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 NPIPB6E9PJ23 425 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 OVOL1O14753 267 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 MUC4Q99102 2169 aa10.38□□□□□ -0.75
CCDC88A-211ENST00000471947 IGHV3-38A0A0C4DH36 116 aa10.37□□□□□ -0.75
CCDC88A-211ENST00000471947 PHLDA1Q8WV24 401 aaPredicted RBP10.37□□□□□ -0.75
CCDC88A-211ENST00000471947 ZNF876PQ49A33 203 aa10.37□□□□□ -0.75
CCDC88A-211ENST00000471947 CSTL1Q9H114 145 aa10.37□□□□□ -0.75
CCDC88A-211ENST00000471947 MGAM2Q2M2H8 2515 aa10.37□□□□□ -0.75
CCDC88A-211ENST00000471947 NBEAL1Q6ZS30 2694 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 SAP30O75446 220 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 TMEM61Q8N0U2 210 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 KIR2DL5BA0A0G2JN68 375 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 KIR2DL5BA0A0G2JPC4 375 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 FAM231BA6NCW3 169 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 CD300EQ496F6 205 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 KIR2DL5AQ8N109 375 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 Q8N976 141 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 NOTCH1P46531 2555 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 NPSP0C0P6 89 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 OR1N2Q8NGR9 330 aa10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 DLX4Q92988 240 aaPredicted RBP10.36□□□□□ -0.75
CCDC88A-211ENST00000471947 TENM4Q6N022 2769 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 J3QKU1 62 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 FOSL1P15407 271 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 KLF5Q13887 457 aaPredicted RBP10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 NUTF2P61970 127 aaKnown RBP10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 GPHB5Q86YW7 130 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 P0DMU3 169 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 FAM231AP0DMU4 169 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 FAM231CP0DMU5 169 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 C20orf144Q9BQM9 153 aa10.35□□□□□ -0.75
CCDC88A-211ENST00000471947 K7EP13 123 aa10.34□□□□□ -0.75
CCDC88A-211ENST00000471947 SCGB1D4Q6XE38 83 aa10.34□□□□□ -0.75
CCDC88A-211ENST00000471947 WFDC10AQ9H1F0 79 aa10.34□□□□□ -0.75
CCDC88A-211ENST00000471947 TMEM170BQ5T4T1 132 aa10.34□□□□□ -0.75
CCDC88A-211ENST00000471947 ZFAND2AQ8N6M9 145 aa10.34□□□□□ -0.75
CCDC88A-211ENST00000471947 MRPL35Q9NZE8 188 aaKnown RBP10.34□□□□□ -0.75
CCDC88A-211ENST00000471947 GATA3P23771 443 aa10.33□□□□□ -0.76
CCDC88A-211ENST00000471947 RPL39P62891 51 aaKnown RBP10.33□□□□□ -0.76
CCDC88A-211ENST00000471947 OPRPNQ99935 248 aaPredicted RBP10.33□□□□□ -0.76
CCDC88A-211ENST00000471947 PROK1P58294 105 aa10.33□□□□□ -0.76
CCDC88A-211ENST00000471947 Q8N1Y9 231 aa10.33□□□□□ -0.76
CCDC88A-211ENST00000471947 IGLC6P0CF74 106 aa10.33□□□□□ -0.76
CCDC88A-211ENST00000471947 PET117Q6UWS5 81 aa10.33□□□□□ -0.76
CCDC88A-211ENST00000471947 A0A1B0GW15 77 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 CITED2Q99967 270 aaPredicted RBP10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 A0A0U1RRA0 63 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 H7C2G1 150 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 PSMB8P28062 276 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 OR4C5Q8NGB2 326 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 RNF185Q96GF1 192 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 CD28P10747 220 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 ESDP10768 282 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 LAGE3Q14657 143 aa10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 MRPL16Q9NX20 251 aaKnown RBP10.32□□□□□ -0.76
CCDC88A-211ENST00000471947 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 DNLZQ5SXM8 178 aa10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 DPH3P1Q9H4G8 78 aa10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 LGALS1P09382 135 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 LINC01559Q495D7 138 aa10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 C9orf47Q6ZRZ4 202 aa10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 STAB1Q9NY15 2570 aa10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 SUMO2P61956 95 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 ZNF702PQ9H963 129 aa10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 NXT2Q9NPJ8 142 aaKnown RBP10.31□□□□□ -0.76
CCDC88A-211ENST00000471947 DNAJC9-AS1A6NH13 148 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 LINC01619G3V211 115 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 C2orf88Q9BSF0 95 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 CTRLP40313 264 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 CDKN1BP46527 198 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 MTURNQ8N3F0 131 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 KIR2DL4Q99706 377 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 ST20Q9HBF5 79 aa10.3□□□□□ -0.76
CCDC88A-211ENST00000471947 STHQ8IWL8 128 aa10.29□□□□□ -0.76
CCDC88A-211ENST00000471947 PF4P02776 101 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms