RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 MRPL35Q9NZE8 188 aaKnown RBP10.82□□□□□ -0.68
LIG1-202ENST00000427526 HLA-DRB4X5D2U9 266 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 B4DSR2 109 aa10.81□□□□□ -0.68
LIG1-202ENST00000427526 K7EP34 96 aa10.81□□□□□ -0.68
LIG1-202ENST00000427526 BRI3O95415 125 aa10.81□□□□□ -0.68
LIG1-202ENST00000427526 NAA38Q9BRA0 125 aaKnown RBP10.81□□□□□ -0.68
LIG1-202ENST00000427526 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.81□□□□□ -0.681e-7■■■■□ 22.1
LIG1-202ENST00000427526 TRBV25-1A0A075B6N4 114 aa10.81□□□□□ -0.68
LIG1-202ENST00000427526 RAB37Q96AX2 223 aa10.81□□□□□ -0.68
LIG1-202ENST00000427526 FAM19A4Q96LR4 140 aa10.81□□□□□ -0.68
LIG1-202ENST00000427526 TMEM160Q9NX00 188 aa10.81□□□□□ -0.68
LIG1-202ENST00000427526 PTPN13Q12923 2485 aa10.8□□□□□ -0.68
LIG1-202ENST00000427526 A0A087WX48 190 aa10.8□□□□□ -0.68
LIG1-202ENST00000427526 H3BUX3 64 aa10.8□□□□□ -0.68
LIG1-202ENST00000427526 OVOL1O14753 267 aa10.8□□□□□ -0.68
LIG1-202ENST00000427526 TCTEX1D4Q5JR98 221 aa10.8□□□□□ -0.68
LIG1-202ENST00000427526 CHAC1Q9BUX1 264 aa10.8□□□□□ -0.68
LIG1-202ENST00000427526 SMIM2Q9BVW6 85 aa10.8□□□□□ -0.68
LIG1-202ENST00000427526 TRAV21A0A0B4J279 112 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 A0A1W2PPM0 123 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 FXYD2P54710 66 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 DSCR9P59020 149 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 OR10J6PQ8NGY7 276 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 DEFB1P60022 68 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 TM4SF20Q53R12 229 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 GEMIN7Q9H840 131 aaKnown RBP10.79□□□□□ -0.68
LIG1-202ENST00000427526 CSPG4Q6UVK1 2322 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 IGHG2P01859 326 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 RASL10AQ92737 203 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 USMG5Q96IX5 58 aa10.79□□□□□ -0.68
LIG1-202ENST00000427526 ANKRD17O75179 2603 aaKnown RBP10.78□□□□□ -0.68
LIG1-202ENST00000427526 H3BUA1 57 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 TSPAN13O95857 204 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 APRG1Q8IVJ8 170 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 A0A096LNT2 108 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 SPRY2O43597 315 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 SMIM13P0DJ93 91 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 SLC25A16P16260 332 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 GCSHP23434 173 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 MAPKAPK5-AS1Q8N8E1 139 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 TM2D2Q9BX73 214 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 KLK15Q9H2R5 256 aa10.78□□□□□ -0.68
LIG1-202ENST00000427526 M0R381 172 aa10.77□□□□□ -0.68
LIG1-202ENST00000427526 BLCAPP62952 87 aa10.77□□□□□ -0.68
LIG1-202ENST00000427526 Q6ZS46 218 aa10.77□□□□□ -0.68
LIG1-202ENST00000427526 ABCA12Q86UK0 2595 aa10.77□□□□□ -0.69
LIG1-202ENST00000427526 TRAV12-1A0A0B4J245 112 aa10.77□□□□□ -0.69
LIG1-202ENST00000427526 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.77□□□□□ -0.69
LIG1-202ENST00000427526 SUMO2P61956 95 aaKnown RBP10.77□□□□□ -0.69
LIG1-202ENST00000427526 ANXA2RQ3ZCQ2 193 aa10.77□□□□□ -0.69
LIG1-202ENST00000427526 PHLDA1Q8WV24 401 aaPredicted RBP10.77□□□□□ -0.69
LIG1-202ENST00000427526 C20orf78Q9BR46 151 aa10.77□□□□□ -0.69
LIG1-202ENST00000427526 ZANQ9Y493 2812 aa10.77□□□□□ -0.69
LIG1-202ENST00000427526 RNF223E7ERA6 249 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 MED14OSP0DP75 135 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 PLNP26678 52 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 TOMM6Q96B49 74 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 DPH3P1Q9H4G8 78 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 SS18L2Q9UHA2 77 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 GAGE12HA6NDE8 117 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 A6NDX4 124 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 IGHV3-11P01762 117 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 ASIPP42127 132 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 HERV-K104P63124 156 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 ORMDL2Q53FV1 153 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 F6UB75 175 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 CEND1Q8N111 149 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 C14orf178Q8N769 122 aaPredicted RBP10.76□□□□□ -0.69
LIG1-202ENST00000427526 LINC01356Q8N9X3 169 aa10.76□□□□□ -0.69
LIG1-202ENST00000427526 TSSC4Q9Y5U2 329 aaPredicted RBP10.76□□□□□ -0.69
LIG1-202ENST00000427526 TRBV7-9A0A0J9YWB2 115 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 K7EMI3 77 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 TGFAP01135 160 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 S100A4P26447 101 aaKnown RBP10.75□□□□□ -0.69
LIG1-202ENST00000427526 CD300EQ496F6 205 aaPredicted RBP10.75□□□□□ -0.69
LIG1-202ENST00000427526 SAMD5Q5TGI4 173 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 RPL39LQ96EH5 51 aaKnown RBP10.75□□□□□ -0.69
LIG1-202ENST00000427526 PHLDA3Q9Y5J5 127 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 SPCS1Q9Y6A9 102 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 TEX48A0A1B0GUV7 120 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 F8VRH5 84 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 H7C1H1 209 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 RNASE3P12724 160 aaKnown RBP10.75□□□□□ -0.69
LIG1-202ENST00000427526 RNASE4P34096 147 aaKnown RBP10.75□□□□□ -0.69
LIG1-202ENST00000427526 OR5A1Q8NGJ0 315 aa10.75□□□□□ -0.69
LIG1-202ENST00000427526 GNRH2O43555 120 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 IGLV1-40P01703 118 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 GATA3P23771 443 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 RPL24P83731 157 aaKnown RBP10.74□□□□□ -0.69
LIG1-202ENST00000427526 NEXN-AS1Q8NBZ9 246 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 RHPN1-AS1Q9BWJ2 59 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 FABP2P12104 132 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 RPL11P62913 178 aaKnown RBP10.74□□□□□ -0.69
LIG1-202ENST00000427526 POM121L12Q8N7R1 296 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 SCGB3A1Q96QR1 104 aa10.74□□□□□ -0.69
LIG1-202ENST00000427526 NAV2Q8IVL1 2488 aa10.73□□□□□ -0.69
LIG1-202ENST00000427526 K7ERJ3 54 aa10.73□□□□□ -0.69
LIG1-202ENST00000427526 PF4V1P10720 104 aa10.73□□□□□ -0.69
LIG1-202ENST00000427526 TAL2Q16559 108 aa10.73□□□□□ -0.69
LIG1-202ENST00000427526 LCNL1Q6ZST4 164 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms