RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 C9orf118A6NHY6 69 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 PRSS29PA6NIE9 313 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 G3V4G9 280 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 MRPS12O15235 138 aaKnown RBP6.66□□□□□ -1.34
USP40-203ENST00000427112 RS1O15537 224 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 CT83Q5H943 113 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 CHAC1Q9BUX1 264 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 KAAG1Q9UBP8 84 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 K7EP34 96 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 CRXO43186 299 aaPredicted RBP6.66□□□□□ -1.34
USP40-203ENST00000427112 IGHV4-39P01824 125 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 INSL3P51460 131 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 MRPL52Q86TS9 123 aaKnown RBP6.66□□□□□ -1.34
USP40-203ENST00000427112 RNF185Q96GF1 192 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 C20orf78Q9BR46 151 aa6.66□□□□□ -1.34
USP40-203ENST00000427112 TRAV12-2A0A075B6T6 113 aa6.65□□□□□ -1.34
USP40-203ENST00000427112 TRAV12-3A0A0B4J271 114 aa6.65□□□□□ -1.34
USP40-203ENST00000427112 MEIG1Q5JSS6 88 aa6.65□□□□□ -1.34
USP40-203ENST00000427112 ZNF562Q6V9R5 426 aa6.65□□□□□ -1.34
USP40-203ENST00000427112 OPRPNQ99935 248 aaPredicted RBP6.65□□□□□ -1.34
USP40-203ENST00000427112 TMEM14CQ9P0S9 112 aa6.65□□□□□ -1.34
USP40-203ENST00000427112 TRBV25-1A0A075B6N4 114 aa6.65□□□□□ -1.35
USP40-203ENST00000427112 IGKCP01834 107 aa6.65□□□□□ -1.35
USP40-203ENST00000427112 SCGB1A1P11684 91 aa6.65□□□□□ -1.35
USP40-203ENST00000427112 C10orf99Q6UWK7 81 aa6.65□□□□□ -1.35
USP40-203ENST00000427112 NPFFR1Q9GZQ6 430 aa6.65□□□□□ -1.35
USP40-203ENST00000427112 WI2-2373I1.2A0A1W2PRP0 233 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 GAGE12JA6NER3 117 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 GAGE7O76087 117 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 GAGE12FP0CL80 117 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 GAGE12GP0CL81 117 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 GAGE12IP0CL82 117 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 NPC2P61916 151 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 GAGE4Q13068 117 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 RNASE13Q5GAN3 156 aaKnown RBP6.64□□□□□ -1.35
USP40-203ENST00000427112 MYOZ3Q8TDC0 251 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 PTH2Q96A98 100 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 A0A1W2PPM0 123 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 LY6LH3BQJ8 138 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 TMEM30BQ3MIR4 351 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 C8orf86Q6ZUL3 223 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 C20orf173Q96LM9 149 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 MS4A6AQ9H2W1 248 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 TRBV7-9A0A0J9YWB2 115 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 HERVK_113P61574 105 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 BLCAPP62952 87 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 ADORA2A-AS1P86434 159 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 ODF1Q14990 250 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 CCDC144NLQ6NUI1 221 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 Q8N9W7 124 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 CCDC140Q96MF4 163 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 MSRB2Q9Y3D2 182 aa6.64□□□□□ -1.35
USP40-203ENST00000427112 ADARB2-AS1A8MUL3 147 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 INS-IGF2F8WCM5 200 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 HLA-DRB4P13762 266 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 C1QTNF4Q9BXJ3 329 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 PHLDA3Q9Y5J5 127 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 HLA-DRB4X5D2U9 266 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 RPL39P62891 51 aaKnown RBP6.63□□□□□ -1.35
USP40-203ENST00000427112 SCGB3A1Q96QR1 104 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 EDA2RQ9HAV5 297 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 C1orf43Q9BWL3 253 aa6.63□□□□□ -1.35
USP40-203ENST00000427112 BUB3O43684 328 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 METTL26Q96S19 204 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 PGPEP1Q9NXJ5 209 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 OR11H12B2RN74 326 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 ZNF575Q86XF7 245 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 OR11H1Q8NG94 326 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 OR11H2Q8NH07 326 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 TMEM238LA0A1B0GVL6 79 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 DPM2O94777 84 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 ATP5J2P56134 94 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 RAX2Q96IS3 184 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 KLK9Q9UKQ9 250 aa6.62□□□□□ -1.35
USP40-203ENST00000427112 DOPEY1Q5JWR5 2465 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 IGSF10Q6WRI0 2623 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 A8MWV9 139 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 C19orf84I3L1E1 186 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 LGALS9BQ3B8N2 356 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 LGALS9CQ6DKI2 356 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 MUC4Q99102 2169 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 KNCNA6PVL3 124 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 H3BRM9 83 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 MT-ATP8P03928 68 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 ZNF688P0C7X2 276 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 GATA3P23771 443 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 NBL1P41271 181 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 A0A0U1RRA0 63 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 IGHV4-38-2P0DP08 117 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 TMEM170BQ5T4T1 132 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 C9orf153Q5TBE3 101 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 C11orf44Q8N8P7 122 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 PLEKHB2Q96CS7 222 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 HHLA3Q9XRX5 114 aa6.61□□□□□ -1.35
USP40-203ENST00000427112 HOXA3O43365 443 aaPredicted RBP6.6□□□□□ -1.35
USP40-203ENST00000427112 IGLC6P0CF74 106 aa6.6□□□□□ -1.35
USP40-203ENST00000427112 SLC25A16P16260 332 aa6.6□□□□□ -1.35
USP40-203ENST00000427112 OR4X2Q8NGF9 303 aa6.6□□□□□ -1.35
USP40-203ENST00000427112 DUX3Q96PT4 197 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms