RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ZNF876PQ49A33 203 aa15.64■□□□□ 0.09
SHMT1-203ENST00000354098 CXCL1P09341 107 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 ERVFC1-1P60608 527 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 UQCC3Q6UW78 93 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 C18orf15Q96N68 181 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 SCRT2Q9NQ03 307 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 STARD9Q9P2P6 4700 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 NUPR2A6NF83 97 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 IGHV3-53P01767 116 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 ADIRFQ15847 76 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 FAM231DQ6ZW35 169 aa15.63■□□□□ 0.09
SHMT1-203ENST00000354098 RPP21Q9H633 154 aaKnown RBP15.63■□□□□ 0.09
SHMT1-203ENST00000354098 POM121L12Q8N7R1 296 aa15.62■□□□□ 0.09
SHMT1-203ENST00000354098 ISOC2Q96AB3 205 aa15.62■□□□□ 0.09
SHMT1-203ENST00000354098 F5H768 121 aa15.61■□□□□ 0.09
SHMT1-203ENST00000354098 HOXA5P20719 270 aa15.61■□□□□ 0.09
SHMT1-203ENST00000354098 RPS20P60866 119 aaKnown RBP15.61■□□□□ 0.09
SHMT1-203ENST00000354098 DMRTA1Q5VZB9 504 aa15.61■□□□□ 0.09
SHMT1-203ENST00000354098 PHLDA3Q9Y5J5 127 aa15.61■□□□□ 0.09
SHMT1-203ENST00000354098 MUC21A0A0G2JKD1 596 aa15.6■□□□□ 0.09
SHMT1-203ENST00000354098 MUC21A0A140T8X8 626 aa15.6■□□□□ 0.09
SHMT1-203ENST00000354098 GATCO43716 136 aaKnown RBP15.6■□□□□ 0.09
SHMT1-203ENST00000354098 PTH2Q96A98 100 aa15.6■□□□□ 0.09
SHMT1-203ENST00000354098 SSBP4Q9BWG4 385 aaPredicted RBP15.6■□□□□ 0.09
SHMT1-203ENST00000354098 IGLL5B9A064 214 aa15.6■□□□□ 0.09
SHMT1-203ENST00000354098 MED14OSP0DP75 135 aa15.6■□□□□ 0.09
SHMT1-203ENST00000354098 OR10AG1Q8NH19 301 aa15.6■□□□□ 0.09
SHMT1-203ENST00000354098 ZNF479Q96JC4 524 aa15.6■□□□□ 0.09
SHMT1-203ENST00000354098 TMEM218A2RU14 115 aa15.59■□□□□ 0.09
SHMT1-203ENST00000354098 M0R381 172 aa15.59■□□□□ 0.09
SHMT1-203ENST00000354098 SNAI2O43623 268 aa15.59■□□□□ 0.09
SHMT1-203ENST00000354098 IGLC6P0CF74 106 aa15.59■□□□□ 0.09
SHMT1-203ENST00000354098 TPPP3Q9BW30 176 aa15.59■□□□□ 0.09
SHMT1-203ENST00000354098 XKRY2A2RUG3 117 aa15.58■□□□□ 0.08
SHMT1-203ENST00000354098 OR5AL1P0C617 328 aa15.58■□□□□ 0.08
SHMT1-203ENST00000354098 ADCYAP1P18509 176 aa15.58■□□□□ 0.08
SHMT1-203ENST00000354098 SSTP61278 116 aa15.58■□□□□ 0.08
SHMT1-203ENST00000354098 JPT2Q9H910 190 aa15.58■□□□□ 0.08
SHMT1-203ENST00000354098 OSTCQ9NRP0 149 aa15.58■□□□□ 0.08
SHMT1-203ENST00000354098 KLK5Q9Y337 293 aaPredicted RBP15.58■□□□□ 0.08
SHMT1-203ENST00000354098 FER1L6-AS1Q8NA97 138 aa15.57■□□□□ 0.08
SHMT1-203ENST00000354098 OR4C5Q8NGB2 326 aa15.57■□□□□ 0.08
SHMT1-203ENST00000354098 SFRP2Q96HF1 295 aa15.57■□□□□ 0.08
SHMT1-203ENST00000354098 TENM2Q9NT68 2774 aa15.57■□□□□ 0.08
SHMT1-203ENST00000354098 TRAV4A0A0B4J268 109 aa15.57■□□□□ 0.08
SHMT1-203ENST00000354098 CFAP126Q5VTH2 177 aa15.57■□□□□ 0.08
SHMT1-203ENST00000354098 RS1O15537 224 aa15.56■□□□□ 0.08
SHMT1-203ENST00000354098 TMEM88Q6PEY1 159 aa15.56■□□□□ 0.08
SHMT1-203ENST00000354098 SYT8Q8NBV8 401 aa15.56■□□□□ 0.08
SHMT1-203ENST00000354098 GTSF1Q8WW33 167 aa15.56■□□□□ 0.08
SHMT1-203ENST00000354098 IGHV4-4A0A075B6R2 117 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 FHL2Q14192 279 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 PIK3CD-AS1Q5SR53 167 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 LYZL1Q6UWQ5 148 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 ZFP82Q8N141 532 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 C15orf54Q8N8G6 183 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 NDUFAF3Q9BU61 184 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 V9GYV3 84 aa15.55■□□□□ 0.08
SHMT1-203ENST00000354098 DYNC2H1Q8NCM8 4307 aaKnown RBP15.54■□□□□ 0.08
SHMT1-203ENST00000354098 F8W036 122 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 OR10G8Q8NGN5 311 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 IGHV3-73A0A0B4J1V6 119 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 A8MWL6 223 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 NXPH4O95158 308 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 CT83Q5H943 113 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 SPANXN1Q5VSR9 72 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 SAMD10Q9BYL1 202 aa15.54■□□□□ 0.08
SHMT1-203ENST00000354098 TRAV26-1A0A087WT03 109 aa15.53■□□□□ 0.08
SHMT1-203ENST00000354098 A0A0J9YY99 117 aa15.53■□□□□ 0.08
SHMT1-203ENST00000354098 A0A1W2PPQ1 181 aa15.53■□□□□ 0.08
SHMT1-203ENST00000354098 TRGV4A0A0C4DH28 118 aa15.52■□□□□ 0.08
SHMT1-203ENST00000354098 A8MWV9 139 aa15.52■□□□□ 0.08
SHMT1-203ENST00000354098 APLNQ9ULZ1 77 aa15.52■□□□□ 0.08
SHMT1-203ENST00000354098 F2Z2F3 143 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 TSKUQ8WUA8 353 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 MSRB1Q9NZV6 116 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 CTRLP40313 264 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 PNRC1Q12796 327 aaPredicted RBP15.51■□□□□ 0.07
SHMT1-203ENST00000354098 VSIG2Q96IQ7 327 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 FAM210BQ96KR6 192 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 SEC11CQ9BY50 192 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 HHLA3Q9XRX5 114 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 NACAE9PAV3 2078 aa15.51■□□□□ 0.07
SHMT1-203ENST00000354098 A0A087WWL8 130 aa15.5■□□□□ 0.07
SHMT1-203ENST00000354098 UFSP1Q6NVU6 142 aa15.5■□□□□ 0.07
SHMT1-203ENST00000354098 CRYGDP07320 174 aa15.49■□□□□ 0.07
SHMT1-203ENST00000354098 FOXA3P55318 350 aaPredicted RBP15.49■□□□□ 0.07
SHMT1-203ENST00000354098 PGLYRP4Q96LB8 373 aa15.49■□□□□ 0.07
SHMT1-203ENST00000354098 PRO0255Q9UI72 69 aa15.49■□□□□ 0.07
SHMT1-203ENST00000354098 PLECQ15149 4684 aaKnown RBP15.49■□□□□ 0.07
SHMT1-203ENST00000354098 NTF3P20783 257 aa15.48■□□□□ 0.07
SHMT1-203ENST00000354098 CRYBA4P53673 196 aa15.48■□□□□ 0.07
SHMT1-203ENST00000354098 FAM74A4Q5TZK3 123 aa15.48■□□□□ 0.07
SHMT1-203ENST00000354098 CACNG7P62955 275 aa15.48■□□□□ 0.07
SHMT1-203ENST00000354098 RNF212Q495C1 297 aa15.48■□□□□ 0.07
SHMT1-203ENST00000354098 Q6ZSN1 163 aa15.48■□□□□ 0.07
SHMT1-203ENST00000354098 GFRA4Q9GZZ7 299 aa15.48■□□□□ 0.07
SHMT1-203ENST00000354098 HIGD1CA8MV81 97 aa15.47■□□□□ 0.07
SHMT1-203ENST00000354098 PAX4O43316 350 aa15.47■□□□□ 0.07
SHMT1-203ENST00000354098 GATA1P15976 413 aaPredicted RBP15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms