RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 NRACQ8N912 160 aa7.78□□□□□ -1.16
LIMA1-201ENST00000341247 IGHV4OR15-8A0A075B7B6 117 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 A0A087WW49 117 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 CD5LO43866 347 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 COX8AP10176 69 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 HTN1P15515 57 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 LGALS9BQ3B8N2 356 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 LGALS9CQ6DKI2 356 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 MS4A6AQ9H2W1 248 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 BVES-AS1Q5T3Y7 98 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 Q8N8P6 123 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 Q96MF0 132 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 TMEM160Q9NX00 188 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 MTORP42345 2549 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 MUC4Q99102 2169 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 A0A087WWL8 130 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 CD7P09564 240 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 IGHV4-31P0DP07 118 aa7.77□□□□□ -1.17
LIMA1-201ENST00000341247 ZNF124Q15973 351 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 DCANP1Q8TF63 244 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 KMT2BQ9UMN6 2715 aaPredicted RBP7.76□□□□□ -1.17
LIMA1-201ENST00000341247 RNASE3P12724 160 aaKnown RBP7.76□□□□□ -1.17
LIMA1-201ENST00000341247 ID1P41134 155 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 FAM74A4Q5TZK3 123 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 FAM159AQ6UWV7 190 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 C2orf91Q6ZV80 131 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 GTSCR1Q86UQ5 136 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 VPREB3Q9UKI3 123 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 PTTG1IPP53801 180 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 LAGE3Q14657 143 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 VAMP3Q15836 100 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 SPINK13Q1W4C9 94 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 C11orf44Q8N8P7 122 aa7.76□□□□□ -1.17
LIMA1-201ENST00000341247 GCN1Q92616 2671 aaKnown RBP7.75□□□□□ -1.17
LIMA1-201ENST00000341247 IGLV2-18A0A075B6J9 118 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 F5H697 171 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 NAA38Q9BRA0 125 aaKnown RBP7.75□□□□□ -1.17
LIMA1-201ENST00000341247 LENEPQ9Y5L5 61 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 COX11Q9Y6N1 276 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 IGKV2D-26A0A0A0MRZ7 120 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 HOXD3P31249 432 aaPredicted RBP7.75□□□□□ -1.17
LIMA1-201ENST00000341247 DPF1Q92782 380 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 SLURP1P55000 103 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 ODF1Q14990 250 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 RASL10AQ92737 203 aa7.75□□□□□ -1.17
LIMA1-201ENST00000341247 CCL25O15444 150 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 MYOZ3Q8TDC0 251 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 ZNF702PQ9H963 129 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 FGF6P10767 208 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 C12orf54Q6X4T0 127 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 OTOGQ6ZRI0 2925 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 DPH3P1Q9H4G8 78 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 MRPL35Q9NZE8 188 aaKnown RBP7.74□□□□□ -1.17
LIMA1-201ENST00000341247 SMIM2Q9BVW6 85 aa7.74□□□□□ -1.17
LIMA1-201ENST00000341247 BRI3O95415 125 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 PRM2P04554 102 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 SUMO2P61956 95 aaKnown RBP7.73□□□□□ -1.17
LIMA1-201ENST00000341247 DEFB113Q30KQ7 82 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 ZC2HC1BQ5TFG8 222 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 MDFICQ9P1T7 246 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 K7EMT4 169 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 TAX1BP3O14907 124 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 SNRPD3P62318 126 aaKnown RBP7.73□□□□□ -1.17
LIMA1-201ENST00000341247 Q6YL49 198 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 FAM19A4Q96LR4 140 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 IGHV4-4A0A075B6R2 117 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 J3QLI3 93 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 K7EMI3 77 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 IGKCP01834 107 aa7.73□□□□□ -1.17
LIMA1-201ENST00000341247 KNCNA6PVL3 124 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 TMEM97Q5BJF2 176 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 RAB37Q96AX2 223 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 AP1S3Q96PC3 154 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 TRAV8-6A0A0B4J262 113 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 LGALS1P09382 135 aaKnown RBP7.72□□□□□ -1.17
LIMA1-201ENST00000341247 CSTL1Q9H114 145 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 K7EP13 123 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 GAGE1Q13065 139 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 TCTEX1D4Q5JR98 221 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 MRAP2Q96G30 205 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 SCGB3A1Q96QR1 104 aa7.72□□□□□ -1.17
LIMA1-201ENST00000341247 KLLNB2CW77 178 aa7.71□□□□□ -1.17
LIMA1-201ENST00000341247 KRTAP1-3Q8IUG1 177 aa7.71□□□□□ -1.17
LIMA1-201ENST00000341247 ORAOV1Q8WV07 137 aa7.71□□□□□ -1.17
LIMA1-201ENST00000341247 NOTCH2Q04721 2471 aa7.71□□□□□ -1.18
LIMA1-201ENST00000341247 EMP1P54849 157 aa7.71□□□□□ -1.18
LIMA1-201ENST00000341247 BOD1L2Q8IYS8 172 aa7.71□□□□□ -1.18
LIMA1-201ENST00000341247 HHLA3Q9XRX5 114 aa7.71□□□□□ -1.18
LIMA1-201ENST00000341247 A0A0J9YX75 114 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 A0A1W2PRX2 142 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 ATP5LO75964 103 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 DPM2O94777 84 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 WFDC11Q8NEX6 87 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-201ENST00000341247 AMMECR1LQ6DCA0 310 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 Q8N1Y9 231 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 DEFB125Q8N687 156 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 OR11H1Q8NG94 326 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 OR1N2Q8NGR9 330 aa7.7□□□□□ -1.18
LIMA1-201ENST00000341247 UNC79Q9P2D8 2635 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms