RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 DAZAP2Q15038 168 aaPredicted RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 RPL36ALQ969Q0 106 aaKnown RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 UBE2E2Q96LR5 201 aa12.58□□□□□ -0.4
NPHP3-201ENST00000337331 RBMY1BA6NDE4 496 aaKnown RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 RBMY1EA6NEQ0 496 aaKnown RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 RBMY1DP0C7P1 496 aaKnown RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 RBMY1A1P0DJD3 496 aaKnown RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 RBMY1CP0DJD4 496 aa12.58□□□□□ -0.4
NPHP3-201ENST00000337331 MORN3Q6PF18 240 aaPredicted RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 DTX2Q86UW9 622 aa12.58□□□□□ -0.4
NPHP3-201ENST00000337331 MSRB2Q9Y3D2 182 aa12.58□□□□□ -0.4
NPHP3-201ENST00000337331 HCFC1P51610 2035 aa12.58□□□□□ -0.4
NPHP3-201ENST00000337331 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.58□□□□□ -0.4
NPHP3-201ENST00000337331 HLA-DMBP28068 263 aa12.58□□□□□ -0.4
NPHP3-201ENST00000337331 KIAA1549LQ6ZVL6 1849 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 C5orf47Q569G3 176 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 TRPT1Q86TN4 253 aaKnown RBP12.57□□□□□ -0.4
NPHP3-201ENST00000337331 SPXQ9BT56 116 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 KNCNA6PVL3 124 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 PROP1O75360 226 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 ZNF415Q09FC8 603 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 SHISA9B4DS77 424 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 RS1O15537 224 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 DEFB131AP59861 70 aa12.57□□□□□ -0.4
NPHP3-201ENST00000337331 LINC00158P58513 81 aa12.56□□□□□ -0.4
NPHP3-201ENST00000337331 PHLDA1Q8WV24 401 aaPredicted RBP12.56□□□□□ -0.4
NPHP3-201ENST00000337331 NAV2Q8IVL1 2488 aa12.56□□□□□ -0.4
NPHP3-201ENST00000337331 DKK4Q9UBT3 224 aa12.56□□□□□ -0.4
NPHP3-201ENST00000337331 K7EM74 188 aa12.56□□□□□ -0.4
NPHP3-201ENST00000337331 SPINK13Q1W4C9 94 aa12.56□□□□□ -0.4
NPHP3-201ENST00000337331 CFAP126Q5VTH2 177 aa12.55□□□□□ -0.4
NPHP3-201ENST00000337331 MALP21145 153 aa12.55□□□□□ -0.4
NPHP3-201ENST00000337331 TP53TG1Q9Y2A0 90 aa12.55□□□□□ -0.4
NPHP3-201ENST00000337331 J3KT08 172 aa12.55□□□□□ -0.4
NPHP3-201ENST00000337331 MSMBP08118 114 aa12.55□□□□□ -0.4
NPHP3-201ENST00000337331 TRAV13-1A0A0B4J241 112 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 CFC1BP0CG36 223 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 CFC1P0CG37 223 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 MAPK1IP1LQ8NDC0 245 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 MLST8Q9BVC4 326 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 HIVEP3Q5T1R4 2406 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 NAV3Q8IVL0 2385 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 IGHV1-69DA0A0B4J2H0 117 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 IGHV1-69P01742 117 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 EGR2P11161 476 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-201ENST00000337331 NSUN5P1Q3KNT7 163 aa12.54□□□□□ -0.4
NPHP3-201ENST00000337331 LHBP01229 141 aa12.53□□□□□ -0.4
NPHP3-201ENST00000337331 LY6G5BQ8NDX9 201 aa12.53□□□□□ -0.4
NPHP3-201ENST00000337331 IGFBPL1Q8WX77 278 aa12.53□□□□□ -0.4
NPHP3-201ENST00000337331 MRPL36Q9P0J6 103 aaKnown RBP12.53□□□□□ -0.4
NPHP3-201ENST00000337331 PIP4P1Q86T03 277 aa12.53□□□□□ -0.4
NPHP3-201ENST00000337331 Q8N1Y9 231 aa12.53□□□□□ -0.4
NPHP3-201ENST00000337331 TIMM21Q9BVV7 248 aa12.53□□□□□ -0.4
NPHP3-201ENST00000337331 TRACP01848 142 aa12.52□□□□□ -0.4
NPHP3-201ENST00000337331 DOPEY1Q5JWR5 2465 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 TMEM86BQ8N661 226 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 CARD19Q96LW7 228 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 C1orf43Q9BWL3 253 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 CDIP1Q9H305 208 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 SDHAF1A6NFY7 115 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 RHODO00212 210 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 CR1LQ2VPA4 569 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 DPH3Q96FX2 82 aa12.52□□□□□ -0.41
NPHP3-201ENST00000337331 LGALS1P09382 135 aaKnown RBP12.51□□□□□ -0.41
NPHP3-201ENST00000337331 GRNP28799 593 aaKnown RBP12.51□□□□□ -0.41
NPHP3-201ENST00000337331 PAX4O43316 350 aa12.51□□□□□ -0.41
NPHP3-201ENST00000337331 RPL35AP18077 110 aaKnown RBP12.51□□□□□ -0.41
NPHP3-201ENST00000337331 NFE4Q86UQ8 179 aa12.51□□□□□ -0.41
NPHP3-201ENST00000337331 ZNF625Q96I27 306 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-201ENST00000337331 KLK9Q9UKQ9 250 aa12.51□□□□□ -0.41
NPHP3-201ENST00000337331 TEX49A0A1B0GTD5 131 aa12.51□□□□□ -0.41
NPHP3-201ENST00000337331 IGKV1-17P01599 117 aa12.51□□□□□ -0.41
NPHP3-201ENST00000337331 GP9P14770 177 aa12.51□□□□□ -0.41
NPHP3-201ENST00000337331 LINC01620Q4KN68 170 aa12.51□□□□□ -0.41
NPHP3-201ENST00000337331 PRIMA1Q86XR5 153 aa12.5□□□□□ -0.41
NPHP3-201ENST00000337331 C11orf68Q9H3H3 251 aaKnown RBP12.5□□□□□ -0.41
NPHP3-201ENST00000337331 A4D1N5 150 aa12.5□□□□□ -0.41
NPHP3-201ENST00000337331 SMIM2Q9BVW6 85 aa12.5□□□□□ -0.41
NPHP3-201ENST00000337331 C2orf16Q68DN1 1984 aa12.5□□□□□ -0.41
NPHP3-201ENST00000337331 PPDPFQ9H3Y8 114 aa12.5□□□□□ -0.41
NPHP3-201ENST00000337331 HIVEP2P31629 2446 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 WISP2O76076 250 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 INSP01308 110 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 HIST1H4AP62805 103 aaKnown RBP12.49□□□□□ -0.41
NPHP3-201ENST00000337331 RASL10AQ92737 203 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 XCL2Q9UBD3 114 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 TRAV12-2A0A075B6T6 113 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 IGFL2Q6UWQ7 119 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 RNF223E7ERA6 249 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 AGPAT4-IT1Q9H0P7 198 aa12.49□□□□□ -0.41
NPHP3-201ENST00000337331 LINC01356Q8N9X3 169 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 PRSS33Q8NF86 280 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 TLN2Q9Y4G6 2542 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 HTTP42858 3142 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 NDUFA4O00483 81 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 NDUFA11Q86Y39 141 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 DYNAPQ8N1N2 210 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 C8orf31Q8N9H6 132 aa12.48□□□□□ -0.41
NPHP3-201ENST00000337331 A0A1W2PNU3 283 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-201ENST00000337331 E7EUB6 86 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 173.6 ms