RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 ANXA2RQ3ZCQ2 193 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 C11orf44Q8N8P7 122 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 DKK2Q9UBU2 259 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 DYNAPQ8N1N2 210 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 IGKV1-17P01599 117 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 APOC4P55056 127 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 C2CD3Q4AC94 2353 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 C19orf71A6NCJ1 209 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 IGLL5B9A064 214 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 PLA2G2EQ9NZK7 142 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 WI2-2373I1.2A0A1W2PRP0 233 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 ATOX1O00244 68 aa8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 SPAG8Q99932 426 aaPredicted RBP8.07□□□□□ -1.12
CCDC88A-202ENST00000336838 CRYBA4P53673 196 aa8.06□□□□□ -1.12
CCDC88A-202ENST00000336838 C11orf86A6NJI1 115 aa8.06□□□□□ -1.12
CCDC88A-202ENST00000336838 E9PLD3 99 aa8.06□□□□□ -1.12
CCDC88A-202ENST00000336838 RBMY1FQ15415 496 aaKnown RBP8.06□□□□□ -1.12
CCDC88A-202ENST00000336838 YPEL4Q96NS1 127 aa8.06□□□□□ -1.12
CCDC88A-202ENST00000336838 ODF3Q96PU9 254 aa8.06□□□□□ -1.12
CCDC88A-202ENST00000336838 RMI2Q96E14 147 aa8.06□□□□□ -1.12
CCDC88A-202ENST00000336838 IGHV3-73A0A0B4J1V6 119 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 K7EMT4 169 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 SYNJ2BPP57105 145 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 TPSG1Q9NRR2 321 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 PDE6GP18545 87 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 MCRIP2Q9BUT9 160 aaKnown RBP8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 HOXD3P31249 432 aaPredicted RBP8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 PRB3Q04118 309 aaPredicted RBP8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 CFHR4Q92496 578 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 G3V4G9 280 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 BUB3O43684 328 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 ORMDL1Q9P0S3 153 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 K7ERJ3 54 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 LCNL1Q6ZST4 164 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 AGPAT4-IT1Q9H0P7 198 aa8.05□□□□□ -1.12
CCDC88A-202ENST00000336838 CDK2AP2O75956 126 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 TCTEX1D4Q5JR98 221 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 GTSF1Q8WW33 167 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 PIEZO1Q92508 2521 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 SPINK13Q1W4C9 94 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 HIVEP2P31629 2446 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 ODF1Q14990 250 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 PCP2Q8IVA1 136 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 CXCL5P42830 114 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 NPC2P61916 151 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 DEFB131AP59861 70 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 TMEM258P61165 79 aa8.04□□□□□ -1.12
CCDC88A-202ENST00000336838 TRAV26-2A0A0B4J265 109 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 FGF23Q9GZV9 251 aaPredicted RBP8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 VPREB3Q9UKI3 123 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 IGLV2-23P01705 113 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 BRD3OSQ6XYD6 125 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 A0A1W2PRX2 142 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 ICOSQ9Y6W8 199 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 DKK4Q9UBT3 224 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 C16orf54Q6UWD8 224 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 ZNF561-AS1K7EIQ3 104 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 CDPF1Q6NVV7 123 aa8.03□□□□□ -1.12
CCDC88A-202ENST00000336838 TAX1BP3O14907 124 aa8.02□□□□□ -1.12
CCDC88A-202ENST00000336838 CTSGP08311 255 aa8.02□□□□□ -1.12
CCDC88A-202ENST00000336838 MRPL23Q16540 153 aaKnown RBP8.02□□□□□ -1.13
CCDC88A-202ENST00000336838 MAJINQ3KP22 176 aa8.02□□□□□ -1.13
CCDC88A-202ENST00000336838 DPH3Q96FX2 82 aa8.02□□□□□ -1.13
CCDC88A-202ENST00000336838 A0A0U1RRA0 63 aa8.02□□□□□ -1.13
CCDC88A-202ENST00000336838 ZNRD1Q9P1U0 126 aa8.02□□□□□ -1.13
CCDC88A-202ENST00000336838 C2orf70A6NJV1 201 aa8.02□□□□□ -1.13
CCDC88A-202ENST00000336838 IGFL4Q6B9Z1 124 aa8.02□□□□□ -1.13
CCDC88A-202ENST00000336838 TRAV25A0A0B4J276 109 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 C15orf53Q8NAA6 179 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 JMJD7-PLA2G4BH0Y9G9 81 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 DUX4L9Q6RFH8 374 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 G3V318 75 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 LINC00527Q9UJ94 153 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 EIF4EBP1Q13541 118 aaPredicted RBP8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 ODF3L1Q8IXM7 274 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 C16orf74Q96GX8 76 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 IGHV7-81A0A0B4J1V7 117 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 IGLV1-47P01700 117 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 FOXI1Q12951 378 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 FBXL19-AS1Q494R0 122 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 ZFP2Q6ZN57 461 aa8.01□□□□□ -1.13
CCDC88A-202ENST00000336838 PATE2Q6UY27 113 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 NKAPP1Q8N9T2 125 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 TM2D2Q9BX73 214 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 TEX22C9J3V5 150 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 GPHB5Q86YW7 130 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 CRLF1O75462 422 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 HIVEP3Q5T1R4 2406 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 A0A0B4J2C4 111 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 J3KT08 172 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 BAALCQ8WXS3 180 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 CENPVL3A0A0U1RRI6 287 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 U3KQK5 164 aa8□□□□□ -1.13
CCDC88A-202ENST00000336838 PIEZO2Q9H5I5 2752 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 MORN5Q5VZ52 161 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 TDRG1Q3Y452 100 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 A0A0J9YXY3 114 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 CTSZQ9UBR2 303 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 MDFICQ9P1T7 246 aa7.99□□□□□ -1.13
CCDC88A-202ENST00000336838 HTN3P15516 51 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms