RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 SPAG8Q99932 426 aaPredicted RBP13.62□□□□□ -0.23
USP39-201ENST00000323701 H3BMM0 161 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 ZNF493Q6ZR52 646 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 BORCS7Q96B45 105 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 TMEM208Q9BTX3 173 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 SAMD10Q9BYL1 202 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 GOLT1BQ9Y3E0 138 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 MAST4O15021 2626 aa13.62□□□□□ -0.23
USP39-201ENST00000323701 OR10J3Q5JRS4 329 aa13.61□□□□□ -0.23
USP39-201ENST00000323701 AMN1Q8IY45 258 aa13.61□□□□□ -0.23
USP39-201ENST00000323701 ODF3Q96PU9 254 aa13.61□□□□□ -0.23
USP39-201ENST00000323701 TIMM8BQ9Y5J9 83 aaPredicted RBP13.61□□□□□ -0.23
USP39-201ENST00000323701 HLA-DRB4P13762 266 aa13.61□□□□□ -0.23
USP39-201ENST00000323701 C20orf144Q9BQM9 153 aa13.61□□□□□ -0.23
USP39-201ENST00000323701 HLA-DRB4X5D2U9 266 aa13.61□□□□□ -0.23
USP39-201ENST00000323701 A0A1B0GW15 77 aa13.6□□□□□ -0.23
USP39-201ENST00000323701 C7orf71A4D174 169 aa13.6□□□□□ -0.23
USP39-201ENST00000323701 ZNF705AQ6ZN79 300 aaPredicted RBP13.6□□□□□ -0.23
USP39-201ENST00000323701 OR4C46A6NHA9 309 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 RBMY1A1P0DJD3 496 aaKnown RBP13.59□□□□□ -0.23
USP39-201ENST00000323701 RBMY1CP0DJD4 496 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 CDKN1BP46527 198 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 RBMY1FQ15415 496 aaKnown RBP13.59□□□□□ -0.23
USP39-201ENST00000323701 TEX43Q6ZNM6 134 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 KCNS1Q96KK3 526 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 CBY1Q9Y3M2 126 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 SNAI2O43623 268 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 DUSP14O95147 198 aaKnown RBP13.59□□□□□ -0.23
USP39-201ENST00000323701 LINC00614P0C842 121 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 RNASE3P12724 160 aaKnown RBP13.59□□□□□ -0.23
USP39-201ENST00000323701 LEPP41159 167 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 Q8N976 141 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 MIEN1Q9BRT3 115 aa13.59□□□□□ -0.23
USP39-201ENST00000323701 MUC4Q99102 2169 aa13.58□□□□□ -0.23
USP39-201ENST00000323701 TRAV25A0A0B4J276 109 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 CRXO43186 299 aaPredicted RBP13.58□□□□□ -0.24
USP39-201ENST00000323701 IGLV1-51P01701 117 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 OR5AL1P0C617 328 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 FAM104BQ5XKR9 115 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 URB1-AS1Q96HZ7 61 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 A8MTW9 85 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 GAS8-AS1O95177 125 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 PMCHP20382 165 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 LINC00482Q8N8I6 264 aa13.58□□□□□ -0.24
USP39-201ENST00000323701 AMTP48728 403 aa13.57□□□□□ -0.24
USP39-201ENST00000323701 EVI2AP22794 236 aa13.56□□□□□ -0.24
USP39-201ENST00000323701 MRPL51Q4U2R6 128 aaKnown RBP13.56□□□□□ -0.24
USP39-201ENST00000323701 RNF185Q96GF1 192 aa13.56□□□□□ -0.24
USP39-201ENST00000323701 SMKR1H3BMG3 65 aa13.56□□□□□ -0.24
USP39-201ENST00000323701 NPSP0C0P6 89 aa13.56□□□□□ -0.24
USP39-201ENST00000323701 KRTDAPP60985 99 aa13.56□□□□□ -0.24
USP39-201ENST00000323701 FAM19A2Q8N3H0 131 aa13.56□□□□□ -0.24
USP39-201ENST00000323701 PF4P02776 101 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 PRM2P04554 102 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 CD7P09564 240 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 ASIPP42127 132 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 FAM159AQ6UWV7 190 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 NIT1Q86X76 327 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 TMEM191AQ9H0A3 160 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 WFDC10AQ9H1F0 79 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 SCRT2Q9NQ03 307 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 D6R8Y8 96 aa13.55□□□□□ -0.24
USP39-201ENST00000323701 S100A4P26447 101 aaKnown RBP13.55□□□□□ -0.24
USP39-201ENST00000323701 M0R381 172 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 CITED1Q99966 193 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 PAM16Q9Y3D7 125 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 STAB1Q9NY15 2570 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 IGHV4-4A0A075B6R2 117 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 NCR2O95944 276 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 TSPOP30536 169 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 SPANXN1Q5VSR9 72 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 MDFICQ9P1T7 246 aa13.54□□□□□ -0.24
USP39-201ENST00000323701 DMRTA1Q5VZB9 504 aa13.53□□□□□ -0.24
USP39-201ENST00000323701 Q8N1Y9 231 aa13.53□□□□□ -0.24
USP39-201ENST00000323701 U3KQK5 164 aa13.53□□□□□ -0.24
USP39-201ENST00000323701 VAMP8Q9BV40 100 aa13.52□□□□□ -0.24
USP39-201ENST00000323701 OR11H12B2RN74 326 aa13.51□□□□□ -0.25
USP39-201ENST00000323701 GATA1P15976 413 aaPredicted RBP13.51□□□□□ -0.25
USP39-201ENST00000323701 RNASEKQ6P5S7 137 aaKnown RBP13.51□□□□□ -0.25
USP39-201ENST00000323701 C19orf73Q9NVV2 129 aa13.51□□□□□ -0.25
USP39-201ENST00000323701 PHLDA3Q9Y5J5 127 aa13.51□□□□□ -0.25
USP39-201ENST00000323701 IGHV1OR15-1A0A075B7D0 117 aa13.51□□□□□ -0.25
USP39-201ENST00000323701 IGHV3-16A0A0C4DH30 117 aa13.51□□□□□ -0.25
USP39-201ENST00000323701 C3orf79P0CE67 100 aa13.51□□□□□ -0.25
USP39-201ENST00000323701 PMCHL1Q16048 86 aa13.5□□□□□ -0.25
USP39-201ENST00000323701 BEAN1Q3B7T3 259 aa13.5□□□□□ -0.25
USP39-201ENST00000323701 TRAV26-2A0A0B4J265 109 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 CACNG7P62955 275 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 PRELID3AQ96N28 172 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 NPYP01303 97 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 HTN1P15515 57 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 KRTAP24-1Q3LI83 254 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 COL5A1-AS1Q5SY13 56 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 ORMDL3Q8N138 153 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 JPT2Q9H910 190 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 PKD1L1Q8TDX9 2849 aa13.49□□□□□ -0.25
USP39-201ENST00000323701 MED14OSP0DP75 135 aa13.48□□□□□ -0.25
USP39-201ENST00000323701 CKS2P33552 79 aa13.48□□□□□ -0.25
USP39-201ENST00000323701 TRPT1Q86TN4 253 aaKnown RBP13.48□□□□□ -0.25
USP39-201ENST00000323701 C14orf178Q8N769 122 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms