RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 K7ENP7 123 aa12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 IGKV1-17P01599 117 aa12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 NDUFV3P56181 108 aaKnown RBP12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 CITED2Q99967 270 aaPredicted RBP12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 TP53TG3Q9ULZ0 132 aa12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 DENND4CQ5VZ89 1909 aa12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 NACAE9PAV3 2078 aa12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 RPL39LQ96EH5 51 aaKnown RBP12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 F5H768 121 aa12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 TMEM258P61165 79 aa12.87□□□□□ -0.35
SH3RF1-201ENST00000284637 C3orf56Q8N813 242 aa12.86□□□□□ -0.35
SH3RF1-201ENST00000284637 PRSS33Q8NF86 280 aa12.86□□□□□ -0.35
SH3RF1-201ENST00000284637 RBM3P98179 157 aaKnown RBP12.86□□□□□ -0.35
SH3RF1-201ENST00000284637 KRTAP27-1Q3LI81 207 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 PTH2Q96A98 100 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 FAM167A-AS1Q96KT0 104 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 ZNF561-AS1K7EIQ3 104 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 RNF138Q8WVD3 245 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 GATA3P23771 443 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 CRLF1O75462 422 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 MRPL53Q96EL3 112 aaKnown RBP12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 TANC1Q9C0D5 1861 aa12.85□□□□□ -0.35
SH3RF1-201ENST00000284637 K7EIM0 57 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 LHBP01229 141 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 HERVK_113P63121 156 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 MRPL23Q16540 153 aaKnown RBP12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 UBE2DNLQ8IWF7 75 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 C8orf31Q8N9H6 132 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 A0A096LPF7 62 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 IGKV2-29A2NJV5 120 aaPredicted RBP12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 I3L2K1 104 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 NOTCH2Q04721 2471 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 IGKV1OR2-108A0A075B7D4 117 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 A4D1N5 150 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 E9PLD3 99 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 ACACBO00763 2458 aa12.84□□□□□ -0.35
SH3RF1-201ENST00000284637 KMT2EQ8IZD2 1858 aa12.83□□□□□ -0.35
SH3RF1-201ENST00000284637 TRAV13-2A0A0B4J235 113 aa12.83□□□□□ -0.36
SH3RF1-201ENST00000284637 DAD1P61803 113 aa12.83□□□□□ -0.36
SH3RF1-201ENST00000284637 ODF1Q14990 250 aa12.83□□□□□ -0.36
SH3RF1-201ENST00000284637 CLPSL2Q6UWE3 100 aa12.83□□□□□ -0.36
SH3RF1-201ENST00000284637 PLA2G5P39877 138 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 C5orf47Q569G3 176 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 Q9H8V8 135 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 PSCAO43653 123 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 BAALC-AS2P0C853 105 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 TRAV25A0A0B4J276 109 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 IGLV2-14P01704 120 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 DEFB121Q5J5C9 76 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 ODF3L1Q8IXM7 274 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 A0A0B4J2C4 111 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 A0A1B0GX51 115 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 RBAKDNA6NC62 111 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 A0A1B0GXF2 115 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 GRNP28799 593 aaKnown RBP12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 TP73-AS1Q9UF72 201 aa12.82□□□□□ -0.36
SH3RF1-201ENST00000284637 CDK2AP2O75956 126 aa12.81□□□□□ -0.36
SH3RF1-201ENST00000284637 TRBV10-2A0A0K0K1G8 114 aa12.81□□□□□ -0.36
SH3RF1-201ENST00000284637 HOXB4P17483 251 aaPredicted RBP12.81□□□□□ -0.36
SH3RF1-201ENST00000284637 RHOHQ15669 191 aa12.81□□□□□ -0.36
SH3RF1-201ENST00000284637 H3BT86 120 aa12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 SUMO4Q6EEV6 95 aa12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 RNF114Q9Y508 228 aa12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 LENEPQ9Y5L5 61 aa12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 SRSF2Q01130 221 aaKnown RBP12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 A0A0J9YXV3 536 aa12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 ATP5G1P05496 136 aa12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 CTSGP08311 255 aa12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 MRPL36Q9P0J6 103 aaKnown RBP12.8□□□□□ -0.36
SH3RF1-201ENST00000284637 NCOA6Q14686 2063 aaPredicted RBP12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 WT1P19544 449 aaPredicted RBP12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 IGHV7-81A0A0B4J1V7 117 aa12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 PLA2G2CQ5R387 149 aa12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 E7EUB6 86 aa12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 NDUFC2O95298 119 aa12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 SP5Q6BEB4 398 aaPredicted RBP12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 TM2D2Q9BX73 214 aa12.79□□□□□ -0.36
SH3RF1-201ENST00000284637 U3KQE9 123 aa12.78□□□□□ -0.36
SH3RF1-201ENST00000284637 CSPG4Q6UVK1 2322 aa12.78□□□□□ -0.36
SH3RF1-201ENST00000284637 PRAC2D3DTV9 90 aa12.78□□□□□ -0.36
SH3RF1-201ENST00000284637 ANGP03950 147 aaKnown RBP12.78□□□□□ -0.36
SH3RF1-201ENST00000284637 IGLV11-55A0A075B6I3 123 aa12.78□□□□□ -0.36
SH3RF1-201ENST00000284637 CRYGCP07315 174 aa12.78□□□□□ -0.36
SH3RF1-201ENST00000284637 MUSTN1Q8IVN3 82 aa12.77□□□□□ -0.36
SH3RF1-201ENST00000284637 SPATA25Q9BR10 227 aa12.77□□□□□ -0.36
SH3RF1-201ENST00000284637 ICOSQ9Y6W8 199 aa12.77□□□□□ -0.36
SH3RF1-201ENST00000284637 PIFOQ8TCI5 191 aa12.77□□□□□ -0.36
SH3RF1-201ENST00000284637 NKAPP1Q8N9T2 125 aa12.77□□□□□ -0.37
SH3RF1-201ENST00000284637 DSCR8Q96T75 97 aa12.77□□□□□ -0.37
SH3RF1-201ENST00000284637 CENPVL3A0A0U1RRI6 287 aa12.77□□□□□ -0.37
SH3RF1-201ENST00000284637 XCL1P47992 114 aa12.77□□□□□ -0.37
SH3RF1-201ENST00000284637 ZFP2Q6ZN57 461 aa12.77□□□□□ -0.37
SH3RF1-201ENST00000284637 SVIPQ8NHG7 77 aa12.77□□□□□ -0.37
SH3RF1-201ENST00000284637 NOP10Q9NPE3 64 aaKnown RBP12.76□□□□□ -0.37
SH3RF1-201ENST00000284637 DKK4Q9UBT3 224 aa12.76□□□□□ -0.37
SH3RF1-201ENST00000284637 GDF5OSQ5U4N7 250 aa12.76□□□□□ -0.37
SH3RF1-201ENST00000284637 ANKHD1Q8IWZ3 2542 aaKnown RBP12.76□□□□□ -0.37
SH3RF1-201ENST00000284637 C19orf71A6NCJ1 209 aa12.76□□□□□ -0.37
SH3RF1-201ENST00000284637 BUB3O43684 328 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms