RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CCL25O15444 150 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 IGHV4OR15-8A0A075B7B6 117 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 A0A087WW49 117 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 K7EQD1 137 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 GNLYP22749 145 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 DKK2Q9UBU2 259 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 IGKV2-29A2NJV5 120 aaPredicted RBP11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 IGHV2-70P01814 119 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 SPART-AS1P0CW21 52 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 C14orf177Q52M58 125 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 WIPF2Q8TF74 440 aaPredicted RBP11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 IGKV1-27A0A075B6S5 117 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 Q71RC1 249 aaPredicted RBP11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 C5orf38Q86SI9 138 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 C9orf66Q5T8R8 295 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 IGLV3-19P01714 112 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 Q6ZUT4 128 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 NDUFC1O43677 76 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 ZC2HC1AQ96GY0 325 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 DENND4CQ5VZ89 1909 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 PLXNA3P51805 1871 aa11.07□□□□□ -0.64
CCDC88A-201ENST00000263630 GGNQ86UU5 652 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 ZNF833PQ6ZTB9 187 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 C2orf16Q68DN1 1984 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 RNF223E7ERA6 249 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 BPY2O14599 106 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 IGKV1D-17A0A075B6S4 117 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 KLK5Q9Y337 293 aaPredicted RBP11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 A0A0J9YY99 117 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 GYPEP15421 78 aa11.06□□□□□ -0.64
CCDC88A-201ENST00000263630 K7EM74 188 aa11.05□□□□□ -0.64
CCDC88A-201ENST00000263630 IGHV2-70DA0A0C4DH43 119 aa11.05□□□□□ -0.64
CCDC88A-201ENST00000263630 FGF23Q9GZV9 251 aaPredicted RBP11.05□□□□□ -0.64
CCDC88A-201ENST00000263630 ELANEP08246 267 aa11.05□□□□□ -0.64
CCDC88A-201ENST00000263630 CYYR1Q96J86 154 aa11.05□□□□□ -0.64
CCDC88A-201ENST00000263630 H3BT86 120 aa11.05□□□□□ -0.64
CCDC88A-201ENST00000263630 ATP6V0E2Q8NHE4 81 aa11.04□□□□□ -0.64
CCDC88A-201ENST00000263630 RUSC1-AS1Q66K80 236 aa11.04□□□□□ -0.64
CCDC88A-201ENST00000263630 Q96MF0 132 aa11.04□□□□□ -0.64
CCDC88A-201ENST00000263630 SIPA1L1O43166 1804 aa11.04□□□□□ -0.64
CCDC88A-201ENST00000263630 ZSWIM8A7E2V4 1837 aa11.04□□□□□ -0.64
CCDC88A-201ENST00000263630 A6NED7 52 aa11.04□□□□□ -0.64
CCDC88A-201ENST00000263630 FNDC1Q4ZHG4 1894 aaPredicted RBP11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 FAM236DA0A1B0GTK5 79 aa11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 FAM236CP0DP71 79 aa11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 NBASA2RRP1 2371 aa11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 TGFBR3LH3BV60 316 aa11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 LYPD2Q6UXB3 125 aa11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 COL24A1Q17RW2 1714 aa11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 COL8A2P25067 703 aa11.03□□□□□ -0.64
CCDC88A-201ENST00000263630 CCL24O00175 119 aa11.02□□□□□ -0.64
CCDC88A-201ENST00000263630 LMO1P25800 156 aa11.02□□□□□ -0.64
CCDC88A-201ENST00000263630 C10orf105Q8TEF2 133 aa11.02□□□□□ -0.65
CCDC88A-201ENST00000263630 PRR20EP86478 221 aa11.02□□□□□ -0.65
CCDC88A-201ENST00000263630 PRR20CP86479 221 aa11.02□□□□□ -0.65
CCDC88A-201ENST00000263630 PRR20DP86480 221 aa11.02□□□□□ -0.65
CCDC88A-201ENST00000263630 PRR20BP86481 221 aa11.02□□□□□ -0.65
CCDC88A-201ENST00000263630 PRR20AP86496 221 aa11.02□□□□□ -0.65
CCDC88A-201ENST00000263630 UQCRQO14949 82 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 LINC00643Q86TS7 51 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 NCR3O14931 201 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 ATP5EP2Q5VTU8 51 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 PRR14LQ5THK1 2151 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 LYRM9A8MSI8 78 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 TRBV7-3A0A075B6L6 115 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 IGLC1P0CG04 106 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 IGLV10-54A0A075B6I4 117 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 A0A0U1RQV1 116 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 A4D1N5 150 aa11.01□□□□□ -0.65
CCDC88A-201ENST00000263630 IL17DQ8TAD2 202 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 IGHV1-58A0A0C4DH39 117 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 WI2-2373I1.2A0A1W2PRP0 233 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 FOXI1Q12951 378 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 MLANAQ16655 118 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 MGAMO43451 1857 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 GPHB5Q86YW7 130 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 TRAV23DV6A0A075B6W5 121 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 LECT2O14960 151 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 COX7BP24311 80 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 C5orf24Q7Z6I8 188 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 CREBBPQ92793 2442 aa11□□□□□ -0.65
CCDC88A-201ENST00000263630 ZNF747Q9BV97 191 aa10.99□□□□□ -0.65
CCDC88A-201ENST00000263630 WIPF3A6NGB9 483 aa10.99□□□□□ -0.65
CCDC88A-201ENST00000263630 FXYD5Q96DB9 178 aa10.99□□□□□ -0.65
CCDC88A-201ENST00000263630 PNRC2Q9NPJ4 139 aaKnown RBP10.99□□□□□ -0.65
CCDC88A-201ENST00000263630 G3V318 75 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 PINLYPA6NC86 204 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 F8W735 103 aaPredicted RBP10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 PCP2Q8IVA1 136 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 C20orf173Q96LM9 149 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 HHLA3Q9XRX5 114 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 NLRC5Q86WI3 1866 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 E7EQL1 145 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 COL5A3P25940 1745 aaPredicted RBP10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 ADCYAP1P18509 176 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 DSCAMO60469 2012 aa10.98□□□□□ -0.65
CCDC88A-201ENST00000263630 SP5Q6BEB4 398 aaPredicted RBP10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 Q8N1Y9 231 aa10.97□□□□□ -0.65
CCDC88A-201ENST00000263630 LINC00311Q8N616 119 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms