RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 SMIM2Q9BVW6 85 aa11.33□□□□□ -0.6
PTPRA-201ENST00000216877 C11orf86A6NJI1 115 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 K7EM74 188 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 DUSP14O95147 198 aaKnown RBP11.32□□□□□ -0.6
PTPRA-201ENST00000216877 CEMP1Q6PRD7 247 aaPredicted RBP11.32□□□□□ -0.6
PTPRA-201ENST00000216877 ZNF491Q8N8L2 437 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 IGHV1-18A0A0C4DH31 117 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 F5H697 171 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 ELANEP08246 267 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 IGLC6P0CF74 106 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 ZNF22P17026 224 aaPredicted RBP11.32□□□□□ -0.6
PTPRA-201ENST00000216877 GAGE2AQ6NT46 116 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 Q6ZT83 130 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 H3BRN7 92 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 ORMDL2Q53FV1 153 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 OR13C6PQ8NH95 151 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 BAALCQ8WXS3 180 aa11.32□□□□□ -0.6
PTPRA-201ENST00000216877 WT1P19544 449 aaPredicted RBP11.31□□□□□ -0.6
PTPRA-201ENST00000216877 LYPD1Q8N2G4 141 aa11.31□□□□□ -0.6
PTPRA-201ENST00000216877 EEF1AKMT3Q96AZ1 226 aa11.31□□□□□ -0.6
PTPRA-201ENST00000216877 DNAJC30Q96LL9 226 aa11.31□□□□□ -0.6
PTPRA-201ENST00000216877 LINC00527Q9UJ94 153 aa11.31□□□□□ -0.6
PTPRA-201ENST00000216877 RBAKDNA6NC62 111 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 J3KT08 172 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 TMEM200BQ69YZ2 307 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 SPANXA1Q9NS26 97 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 PRAC2D3DTV9 90 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 IGLV2-23P01705 113 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 COX6CP09669 75 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 ZNF474Q6S9Z5 364 aaPredicted RBP11.3□□□□□ -0.6
PTPRA-201ENST00000216877 DYNAPQ8N1N2 210 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 LINC01587Q99440 93 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 SUMO2P61956 95 aaKnown RBP11.3□□□□□ -0.6
PTPRA-201ENST00000216877 MUSTN1Q8IVN3 82 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 CLEC2BQ92478 149 aa11.3□□□□□ -0.6
PTPRA-201ENST00000216877 NDUFA7O95182 113 aa11.29□□□□□ -0.6
PTPRA-201ENST00000216877 SIGLEC9Q9Y336 463 aa11.29□□□□□ -0.6
PTPRA-201ENST00000216877 LGALS9O00182 355 aa11.29□□□□□ -0.6
PTPRA-201ENST00000216877 HOXB4P17483 251 aaPredicted RBP11.29□□□□□ -0.6
PTPRA-201ENST00000216877 NDUFB3O43676 98 aa11.29□□□□□ -0.6
PTPRA-201ENST00000216877 IGKV3-15P01624 115 aa11.29□□□□□ -0.6
PTPRA-201ENST00000216877 Q6Q795 121 aa11.29□□□□□ -0.6
PTPRA-201ENST00000216877 MGAQ8IWI9 3026 aa11.28□□□□□ -0.6
PTPRA-201ENST00000216877 SMG1Q96Q15 3661 aaKnown RBP11.28□□□□□ -0.6
PTPRA-201ENST00000216877 INS-IGF2F8WCM5 200 aa11.28□□□□□ -0.6
PTPRA-201ENST00000216877 IGHV3-33P01772 117 aa11.28□□□□□ -0.6
PTPRA-201ENST00000216877 ZNF883P0CG24 379 aa11.28□□□□□ -0.6
PTPRA-201ENST00000216877 PRR30Q53SZ7 412 aaPredicted RBP11.28□□□□□ -0.6
PTPRA-201ENST00000216877 IGHV3-30P01768 117 aa11.28□□□□□ -0.6
PTPRA-201ENST00000216877 IGHV3-30-5P0DP03 117 aa11.28□□□□□ -0.6
PTPRA-201ENST00000216877 NEXN-AS1Q8NBZ9 246 aa11.28□□□□□ -0.6
PTPRA-201ENST00000216877 MDFICQ9P1T7 246 aa11.27□□□□□ -0.6
PTPRA-201ENST00000216877 TRBV6-1A0A0K0K1D8 114 aa11.27□□□□□ -0.61
PTPRA-201ENST00000216877 J3QQQ9 107 aa11.27□□□□□ -0.61
PTPRA-201ENST00000216877 TM4SF5O14894 197 aa11.27□□□□□ -0.61
PTPRA-201ENST00000216877 IGLV2-18A0A075B6J9 118 aa11.27□□□□□ -0.61
PTPRA-201ENST00000216877 TP53TG1Q9Y2A0 90 aa11.27□□□□□ -0.61
PTPRA-201ENST00000216877 ANKHD1Q8IWZ3 2542 aaKnown RBP11.27□□□□□ -0.61
PTPRA-201ENST00000216877 TRAV12-1A0A0B4J245 112 aa11.26□□□□□ -0.61
PTPRA-201ENST00000216877 TRBV10-2A0A0K0K1G8 114 aa11.26□□□□□ -0.61
PTPRA-201ENST00000216877 NRACQ8N912 160 aa11.26□□□□□ -0.61
PTPRA-201ENST00000216877 DUX5Q96PT3 197 aa11.26□□□□□ -0.61
PTPRA-201ENST00000216877 PHLDA3Q9Y5J5 127 aa11.26□□□□□ -0.61
PTPRA-201ENST00000216877 CCDC168Q8NDH2 2452 aa11.26□□□□□ -0.61
PTPRA-201ENST00000216877 SBSPONQ8IVN8 264 aa11.26□□□□□ -0.61
PTPRA-201ENST00000216877 RPL39P62891 51 aaKnown RBP11.26□□□□□ -0.61
PTPRA-201ENST00000216877 IGKV3D-20A0A0C4DH25 116 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 IGKV3-7A0A075B6H7 116 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 hADV29S1A0JD25 119 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 MFAP4P55083 255 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 TSPEAR-AS2P59090 65 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 PVRIGQ6DKI7 326 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 NACAE9PAV3 2078 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 I3L2K1 104 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 C3orf22Q8N5N4 141 aa11.25□□□□□ -0.61
PTPRA-201ENST00000216877 LINC01619G3V211 115 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 M0R2P5 195 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 TRIAP1O43715 76 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 SLC25A29Q8N8R3 303 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 C9orf106Q8NAJ2 232 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 A0A1W2PNU3 283 aaPredicted RBP11.24□□□□□ -0.61
PTPRA-201ENST00000216877 IGHV1-46P01743 117 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 LYPD2Q6UXB3 125 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 C11orf21Q9P2W6 132 aa11.24□□□□□ -0.61
PTPRA-201ENST00000216877 A0A0U1RRA0 63 aa11.23□□□□□ -0.61
PTPRA-201ENST00000216877 Q6ZSV7 163 aa11.23□□□□□ -0.61
PTPRA-201ENST00000216877 HRCT1Q6UXD1 115 aa11.23□□□□□ -0.61
PTPRA-201ENST00000216877 TOMM6Q96B49 74 aa11.23□□□□□ -0.61
PTPRA-201ENST00000216877 K7EIM0 57 aa11.23□□□□□ -0.61
PTPRA-201ENST00000216877 FAM27E3Q08E93 113 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 PDE6HQ13956 83 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 PIP4P1Q86T03 277 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 TRAV25A0A0B4J276 109 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 F5H768 121 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 NSUN5P1Q3KNT7 163 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 OPRPNQ99935 248 aaPredicted RBP11.22□□□□□ -0.61
PTPRA-201ENST00000216877 KALRNO60229 2985 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 LHBP01229 141 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 FAM74A4Q5TZK3 123 aa11.22□□□□□ -0.61
PTPRA-201ENST00000216877 UBE2E1P51965 193 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms