RNA–Protein interactions for RNA: ENST00000600117.1

CCDC9-205, Transcript of coiled-coil domain containing 9, humanhuman

TSL 2

Gene CCDC9, Length 580 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-205ENST00000600117 PLAC8L1A1L4L8 177 aa13.51□□□□□ -0.25
CCDC9-205ENST00000600117 HTN1P15515 57 aa13.51□□□□□ -0.25
CCDC9-205ENST00000600117 MUC21Q5SSG8 566 aa13.51□□□□□ -0.25
CCDC9-205ENST00000600117 EIF4E3Q8N5X7 224 aaKnown RBP13.51□□□□□ -0.25
CCDC9-205ENST00000600117 RNASE8Q8TDE3 154 aaKnown RBP13.51□□□□□ -0.25
CCDC9-205ENST00000600117 PEA15Q15121 130 aa13.5□□□□□ -0.25
CCDC9-205ENST00000600117 ZNF674Q2M3X9 581 aa13.5□□□□□ -0.25
CCDC9-205ENST00000600117 TDRG1Q3Y452 100 aa13.5□□□□□ -0.25
CCDC9-205ENST00000600117 ANXA2RQ3ZCQ2 193 aa13.5□□□□□ -0.25
CCDC9-205ENST00000600117 TMEM263Q8WUH6 116 aaKnown RBP13.5□□□□□ -0.25
CCDC9-205ENST00000600117 SMDT1Q9H4I9 107 aa13.5□□□□□ -0.25
CCDC9-205ENST00000600117 TP53TG3Q9ULZ0 132 aa13.5□□□□□ -0.25
CCDC9-205ENST00000600117 FABP5P3A8MUU1 101 aa13.49□□□□□ -0.25
CCDC9-205ENST00000600117 C9JCJ5 164 aa13.49□□□□□ -0.25
CCDC9-205ENST00000600117 SH2D1AO60880 128 aa13.49□□□□□ -0.25
CCDC9-205ENST00000600117 GNG4P50150 75 aa13.49□□□□□ -0.25
CCDC9-205ENST00000600117 ZNF493Q6ZR52 646 aa13.49□□□□□ -0.25
CCDC9-205ENST00000600117 SMIM12Q96EX1 92 aa13.49□□□□□ -0.25
CCDC9-205ENST00000600117 C16orf74Q96GX8 76 aa13.49□□□□□ -0.25
CCDC9-205ENST00000600117 TMEM189A5PLL7 270 aa13.48□□□□□ -0.25
CCDC9-205ENST00000600117 PGPEP1LA6NFU8 196 aa13.48□□□□□ -0.25
CCDC9-205ENST00000600117 CBY3A6NI87 242 aa13.48□□□□□ -0.25
CCDC9-205ENST00000600117 CEBPGP53567 150 aa13.48□□□□□ -0.25
CCDC9-205ENST00000600117 FAM159AQ6UWV7 190 aa13.48□□□□□ -0.25
CCDC9-205ENST00000600117 C11orf72Q8NBR9 251 aa13.48□□□□□ -0.25
CCDC9-205ENST00000600117 NAGKQ9UJ70 344 aa13.48□□□□□ -0.25
CCDC9-205ENST00000600117 FAM162BQ5T6X4 162 aa13.47□□□□□ -0.25
CCDC9-205ENST00000600117 IL17DQ8TAD2 202 aa13.47□□□□□ -0.25
CCDC9-205ENST00000600117 CELA1Q9UNI1 258 aa13.47□□□□□ -0.25
CCDC9-205ENST00000600117 IGKV3D-20A0A0C4DH25 116 aa13.46□□□□□ -0.25
CCDC9-205ENST00000600117 EMP1P54849 157 aa13.46□□□□□ -0.25
CCDC9-205ENST00000600117 GNRH2O43555 120 aa13.45□□□□□ -0.26
CCDC9-205ENST00000600117 TYMSP04818 313 aa13.45□□□□□ -0.26
CCDC9-205ENST00000600117 IBA57Q5T440 356 aaKnown RBP13.45□□□□□ -0.26
CCDC9-205ENST00000600117 OCC1Q8TAD7 63 aa13.45□□□□□ -0.26
CCDC9-205ENST00000600117 KCNS1Q96KK3 526 aa13.45□□□□□ -0.26
CCDC9-205ENST00000600117 SMIM7Q9BQ49 75 aa13.45□□□□□ -0.26
CCDC9-205ENST00000600117 SDF2L1Q9HCN8 221 aa13.45□□□□□ -0.26
CCDC9-205ENST00000600117 GSN-AS1Q9NRJ2 163 aa13.45□□□□□ -0.26
CCDC9-205ENST00000600117 TRGV11A0A075B6L2 103 aa13.44□□□□□ -0.26
CCDC9-205ENST00000600117 K7EN84 100 aa13.44□□□□□ -0.26
CCDC9-205ENST00000600117 MGST1P10620 155 aaKnown RBP13.44□□□□□ -0.26
CCDC9-205ENST00000600117 FAM222AQ5U5X8 452 aa13.44□□□□□ -0.26
CCDC9-205ENST00000600117 PRR27Q6MZM9 219 aa13.44□□□□□ -0.26
CCDC9-205ENST00000600117 ZNF575Q86XF7 245 aa13.44□□□□□ -0.26
CCDC9-205ENST00000600117 MDFICQ9P1T7 246 aa13.44□□□□□ -0.26
CCDC9-205ENST00000600117 DKK2Q9UBU2 259 aa13.44□□□□□ -0.26
CCDC9-205ENST00000600117 IGHV3-16A0A0C4DH30 117 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 LINC00862A6NCI5 91 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 C19orf71A6NCJ1 209 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 ZNF727A8MUV8 499 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 KRBOX1C9JBD0 128 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 TCL1AP56279 114 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 LINC01559Q495D7 138 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 TIMM8BQ9Y5J9 83 aaPredicted RBP13.43□□□□□ -0.26
CCDC9-205ENST00000600117 LY96Q9Y6Y9 160 aa13.43□□□□□ -0.26
CCDC9-205ENST00000600117 ORM1P02763 201 aa13.42□□□□□ -0.26
CCDC9-205ENST00000600117 SPART-AS1P0CW21 52 aa13.42□□□□□ -0.26
CCDC9-205ENST00000600117 ZNF415Q09FC8 603 aa13.42□□□□□ -0.26
CCDC9-205ENST00000600117 DAZ2Q13117 558 aaKnown RBP13.42□□□□□ -0.26
CCDC9-205ENST00000600117 OR5I1Q13606 314 aa13.42□□□□□ -0.26
CCDC9-205ENST00000600117 FAM74A3Q4VXF1 159 aa13.42□□□□□ -0.26
CCDC9-205ENST00000600117 NOP10Q9NPE3 64 aaKnown RBP13.42□□□□□ -0.26
CCDC9-205ENST00000600117 CXorf65A6NEN9 183 aa13.41□□□□□ -0.26
CCDC9-205ENST00000600117 LYRM9A8MSI8 78 aa13.41□□□□□ -0.26
CCDC9-205ENST00000600117 SNURFLB1AK76 121 aa13.41□□□□□ -0.26
CCDC9-205ENST00000600117 B4DEV8 164 aa13.41□□□□□ -0.26
CCDC9-205ENST00000600117 M0R036 132 aa13.41□□□□□ -0.26
CCDC9-205ENST00000600117 C11orf45Q8TAV5 145 aa13.41□□□□□ -0.26
CCDC9-205ENST00000600117 TEX48A0A1B0GUV7 120 aa13.4□□□□□ -0.26
CCDC9-205ENST00000600117 NANOS2P60321 138 aaKnown RBP13.4□□□□□ -0.26
CCDC9-205ENST00000600117 RPL19P84098 196 aaKnown RBP13.4□□□□□ -0.26
CCDC9-205ENST00000600117 C12orf74Q32Q52 190 aa13.4□□□□□ -0.26
CCDC9-205ENST00000600117 SOHLH1Q5JUK2 328 aa13.4□□□□□ -0.26
CCDC9-205ENST00000600117 DNLZQ5SXM8 178 aa13.4□□□□□ -0.26
CCDC9-205ENST00000600117 UQCC3Q6UW78 93 aa13.4□□□□□ -0.26
CCDC9-205ENST00000600117 COMMD7Q86VX2 200 aa13.4□□□□□ -0.26
CCDC9-205ENST00000600117 BIN3Q9NQY0 253 aa13.4□□□□□ -0.26
CCDC9-205ENST00000600117 KIAA1109Q2LD37 5005 aa13.39□□□□□ -0.27
CCDC9-205ENST00000600117 SFTA3P0C7M3 94 aa13.39□□□□□ -0.27
CCDC9-205ENST00000600117 RNASE3P12724 160 aaKnown RBP13.39□□□□□ -0.27
CCDC9-205ENST00000600117 LINC01551Q86U37 167 aa13.39□□□□□ -0.27
CCDC9-205ENST00000600117 LINC00612Q8N6U2 182 aa13.39□□□□□ -0.27
CCDC9-205ENST00000600117 LINC00476Q8WZB0 136 aa13.39□□□□□ -0.27
CCDC9-205ENST00000600117 C9orf85Q96MD7 179 aa13.39□□□□□ -0.27
CCDC9-205ENST00000600117 TMSB15BA0A087X1C1 80 aa13.38□□□□□ -0.27
CCDC9-205ENST00000600117 SPINK4O60575 86 aa13.38□□□□□ -0.27
CCDC9-205ENST00000600117 TMEM241Q24JQ0 296 aa13.38□□□□□ -0.27
CCDC9-205ENST00000600117 GRIFINA4D1Z8 144 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 CXCL1P09341 107 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 ASIPP42127 132 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 Q6ZTI0 123 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 NUDT10Q8NFP7 164 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 DAZAP1Q96EP5 407 aaKnown RBP13.37□□□□□ -0.27
CCDC9-205ENST00000600117 NUDT11Q96G61 164 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 SPXQ9BT56 116 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 RNASE7Q9H1E1 156 aaKnown RBP13.37□□□□□ -0.27
CCDC9-205ENST00000600117 NAT8Q9UHE5 227 aa13.37□□□□□ -0.27
CCDC9-205ENST00000600117 RPL23P62829 140 aaKnown RBP13.36□□□□□ -0.27
CCDC9-205ENST00000600117 Q6ZTC4 211 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms