RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 Q6AWC8 147 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 WFDC10BQ8IUB3 73 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 IQCF2Q8IXL9 164 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 LYPD1Q8N2G4 141 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 ZNF479Q96JC4 524 aa10.13□□□□□ -0.79
CLN3-236ENST00000568558 TAS2R45P59539 299 aa10.12□□□□□ -0.79
CLN3-236ENST00000568558 TMEM183BQ1AE95 376 aa10.12□□□□□ -0.79
CLN3-236ENST00000568558 TMEM183AQ8IXX5 376 aa10.12□□□□□ -0.79
CLN3-236ENST00000568558 RASL10AQ92737 203 aa10.12□□□□□ -0.79
CLN3-236ENST00000568558 SPXQ9BT56 116 aa10.12□□□□□ -0.79
CLN3-236ENST00000568558 CYTL1Q9NRR1 136 aa10.12□□□□□ -0.79
CLN3-236ENST00000568558 LENEPQ9Y5L5 61 aa10.12□□□□□ -0.79
CLN3-236ENST00000568558 A0A1W2PPV4 95 aa10.11□□□□□ -0.79
CLN3-236ENST00000568558 DIRC3C9JPN6 131 aa10.11□□□□□ -0.79
CLN3-236ENST00000568558 K7EP13 123 aa10.11□□□□□ -0.79
CLN3-236ENST00000568558 GYPEP15421 78 aa10.11□□□□□ -0.79
CLN3-236ENST00000568558 CDC34P49427 236 aaPredicted RBP10.11□□□□□ -0.79
CLN3-236ENST00000568558 PCNPQ8WW12 178 aaKnown RBP10.11□□□□□ -0.79
CLN3-236ENST00000568558 MSRB1Q9NZV6 116 aa10.11□□□□□ -0.79
CLN3-236ENST00000568558 TRGV11A0A075B6L2 103 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 BORCS7-ASMTA0A0B4J1R7 106 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 ORM1P02763 201 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 ARL14EPLP0DKL9 152 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 EVI2AP22794 236 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 KRTAP10-1P60331 282 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 FAM159AQ6UWV7 190 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 RAB24Q969Q5 203 aa10.1□□□□□ -0.79
CLN3-236ENST00000568558 TRAV4A0A0B4J268 109 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 STAG3L2P0CL84 134 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 STAG3L3P0CL85 134 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 SERF2P84101 59 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 ZNF726P1Q15940 193 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 TDRG1Q3Y452 100 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 Q6ZNX1 250 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 PQLC2Q6ZP29 291 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 KCNRGQ8N5I3 272 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 TMED6Q8WW62 240 aa10.09□□□□□ -0.79
CLN3-236ENST00000568558 C9JCJ5 164 aa10.08□□□□□ -0.8
CLN3-236ENST00000568558 INAFM2P0DMQ5 153 aa10.08□□□□□ -0.8
CLN3-236ENST00000568558 HYLS1Q96M11 299 aa10.08□□□□□ -0.8
CLN3-236ENST00000568558 TXNDC17Q9BRA2 123 aa10.08□□□□□ -0.8
CLN3-236ENST00000568558 NAGKQ9UJ70 344 aa10.08□□□□□ -0.8
CLN3-236ENST00000568558 DMBT1Q9UGM3 2413 aaPredicted RBP10.08□□□□□ -0.8
CLN3-236ENST00000568558 MYCBP2O75592 4640 aa10.08□□□□□ -0.8
CLN3-236ENST00000568558 PGPA6NDG6 321 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 HMSDA8MTL9 139 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 TAAR5O14804 337 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 MBP02144 154 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 CRYGDP07320 174 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 GCHFRP30047 84 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 ZNF345Q14585 488 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 Q5VSD8 79 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 C10orf126Q8N4M7 172 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 OR4C5Q8NGB2 326 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 OTORQ9NRC9 128 aa10.07□□□□□ -0.8
CLN3-236ENST00000568558 IGHV3-16A0A0C4DH30 117 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 LOC100131303A0A0U1RQF7 123 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 M0R2P5 195 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 GNRH2O43555 120 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 GNG5P63218 68 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 SUN5Q8TC36 379 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 FRZBQ92765 325 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 ACTR3CQ9C0K3 210 aaPredicted RBP10.06□□□□□ -0.8
CLN3-236ENST00000568558 RPH3ALQ9UNE2 315 aa10.06□□□□□ -0.8
CLN3-236ENST00000568558 TYMSP04818 313 aa10.05□□□□□ -0.8
CLN3-236ENST00000568558 GCSHP23434 173 aa10.05□□□□□ -0.8
CLN3-236ENST00000568558 CMTM2Q8TAZ6 248 aa10.05□□□□□ -0.8
CLN3-236ENST00000568558 hCG_2014768A0A024R1R8 64 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 TRAV21A0A0B4J279 112 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 F6UZH7 168 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 BCL2L11O43521 198 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 CXorf1O96002 111 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 TIRAPP58753 221 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 FAM74A1Q5RGS3 127 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 AKR1C8PQ5T2L2 129 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 GOLT1AQ6ZVE7 132 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 SH2D6Q7Z4S9 175 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 TVP23CQ96ET8 276 aa10.04□□□□□ -0.8
CLN3-236ENST00000568558 TRAV8-1A0A0A6YYK1 113 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 IGHV3-38A0A0C4DH36 116 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 A0A0D9SG52 128 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 CTXND1A0A1B0GTU2 59 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 GGTLC3B5MD39 225 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 GATA1P15976 413 aaPredicted RBP10.03□□□□□ -0.8
CLN3-236ENST00000568558 FHITP49789 147 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 FGF8P55075 233 aaPredicted RBP10.03□□□□□ -0.8
CLN3-236ENST00000568558 ARL6IP6Q8N6S5 226 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 NHLRC2Q8NBF2 726 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 KCNS1Q96KK3 526 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 SDF2L1Q9HCN8 221 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 TREM1Q9NP99 234 aa10.03□□□□□ -0.8
CLN3-236ENST00000568558 LRCOL1A6NCL2 159 aa10.02□□□□□ -0.81
CLN3-236ENST00000568558 SMR3BP02814 79 aaPredicted RBP10.02□□□□□ -0.81
CLN3-236ENST00000568558 PPT1P50897 306 aa10.02□□□□□ -0.81
CLN3-236ENST00000568558 LINC01556Q5JQF7 62 aa10.02□□□□□ -0.81
CLN3-236ENST00000568558 TMUB2Q71RG4 321 aa10.02□□□□□ -0.81
CLN3-236ENST00000568558 TCTE3Q8IZS6 198 aa10.02□□□□□ -0.81
CLN3-236ENST00000568558 SGK494Q96LW2 274 aa10.02□□□□□ -0.81
CLN3-236ENST00000568558 ZNF471Q9BX82 626 aaPredicted RBP10.02□□□□□ -0.81
CLN3-236ENST00000568558 SRRM2Q9UQ35 2752 aaKnown RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms