RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 DNAH8Q96JB1 4490 aa11.69□□□□□ -0.54
CLK3-221ENST00000568139 OR10J3Q5JRS4 329 aa11.69□□□□□ -0.54
CLK3-221ENST00000568139 IGHV3-30P01768 117 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 IGHV3-33P01772 117 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 TYMSP04818 313 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 H2AFB2P0C5Z0 115 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 IGHV3-30-3P0DP02 117 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 IGHV3-30-5P0DP03 117 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 LELP1Q5T871 98 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 SLC25A29Q8N8R3 303 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 DEFB104AQ8WTQ1 72 aa11.68□□□□□ -0.54
CLK3-221ENST00000568139 TRAV21A0A0B4J279 112 aa11.67□□□□□ -0.54
CLK3-221ENST00000568139 FBLL1A6NHQ2 334 aaKnown RBP11.67□□□□□ -0.54
CLK3-221ENST00000568139 UBE2L3P68036 154 aaKnown RBP11.67□□□□□ -0.54
CLK3-221ENST00000568139 WFDC2Q14508 124 aa11.67□□□□□ -0.54
CLK3-221ENST00000568139 LAGE3Q14657 143 aa11.67□□□□□ -0.54
CLK3-221ENST00000568139 LINC00528Q8N1L1 170 aa11.67□□□□□ -0.54
CLK3-221ENST00000568139 PRADC1Q9BSG0 188 aa11.67□□□□□ -0.54
CLK3-221ENST00000568139 TM2D2Q9BX73 214 aa11.67□□□□□ -0.54
CLK3-221ENST00000568139 TRBV6-4A0A1B0GX49 114 aa11.66□□□□□ -0.54
CLK3-221ENST00000568139 C17orf112F2Z3M2 114 aa11.66□□□□□ -0.54
CLK3-221ENST00000568139 CIDEAO60543 219 aa11.66□□□□□ -0.54
CLK3-221ENST00000568139 TVP23CQ96ET8 276 aa11.66□□□□□ -0.54
CLK3-221ENST00000568139 SDF2L1Q9HCN8 221 aa11.66□□□□□ -0.54
CLK3-221ENST00000568139 RS1O15537 224 aa11.65□□□□□ -0.54
CLK3-221ENST00000568139 RHOHQ15669 191 aa11.65□□□□□ -0.54
CLK3-221ENST00000568139 KCNS1Q96KK3 526 aa11.65□□□□□ -0.54
CLK3-221ENST00000568139 HYLS1Q96M11 299 aa11.65□□□□□ -0.54
CLK3-221ENST00000568139 OTORQ9NRC9 128 aa11.65□□□□□ -0.54
CLK3-221ENST00000568139 OR5AC2Q9NZP5 309 aa11.65□□□□□ -0.54
CLK3-221ENST00000568139 PGPA6NDG6 321 aa11.64□□□□□ -0.55
CLK3-221ENST00000568139 KHDC3LQ587J8 217 aa11.64□□□□□ -0.55
CLK3-221ENST00000568139 CFAP126Q5VTH2 177 aa11.64□□□□□ -0.55
CLK3-221ENST00000568139 ARL6IP6Q8N6S5 226 aa11.64□□□□□ -0.55
CLK3-221ENST00000568139 ATP5SQ99766 215 aa11.64□□□□□ -0.55
CLK3-221ENST00000568139 GTSF1LQ9H1H1 148 aa11.64□□□□□ -0.55
CLK3-221ENST00000568139 F6UZH7 168 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 H0YIZ8 118 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 TAS2R45P59539 299 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 ZNF876PQ49A33 203 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 FFAR4Q5NUL3 377 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 SERTAD4-AS1Q5TG53 156 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 DPPA3Q6W0C5 159 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 ATP6V0E2Q8NHE4 81 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 CMTM2Q8TAZ6 248 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 ASB13Q8WXK3 278 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 TREM1Q9NP99 234 aa11.63□□□□□ -0.55
CLK3-221ENST00000568139 FAM74A1Q5RGS3 127 aa11.62□□□□□ -0.55
CLK3-221ENST00000568139 GOLT1AQ6ZVE7 132 aa11.62□□□□□ -0.55
CLK3-221ENST00000568139 NMES1Q9C002 83 aa11.62□□□□□ -0.55
CLK3-221ENST00000568139 MBD2Q9UBB5 411 aa11.62□□□□□ -0.55
CLK3-221ENST00000568139 RPH3ALQ9UNE2 315 aa11.62□□□□□ -0.55
CLK3-221ENST00000568139 TRAV8-1A0A0A6YYK1 113 aa11.61□□□□□ -0.55
CLK3-221ENST00000568139 SIX6O95475 246 aa11.61□□□□□ -0.55
CLK3-221ENST00000568139 TRAV8-3A0A0A6YYJ7 113 aa11.6□□□□□ -0.55
CLK3-221ENST00000568139 IGHV3-73A0A0B4J1V6 119 aa11.6□□□□□ -0.55
CLK3-221ENST00000568139 FAM240BA0A1B0GVZ2 78 aa11.6□□□□□ -0.55
CLK3-221ENST00000568139 LRRC37A5PQ49AS3 106 aa11.6□□□□□ -0.55
CLK3-221ENST00000568139 Q8N3U1 123 aa11.6□□□□□ -0.55
CLK3-221ENST00000568139 PTH2Q96A98 100 aa11.6□□□□□ -0.55
CLK3-221ENST00000568139 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.59□□□□□ -0.55
CLK3-221ENST00000568139 LECT2O14960 151 aa11.59□□□□□ -0.55
CLK3-221ENST00000568139 EIF3GO75821 320 aaKnown RBP eCLIP11.59□□□□□ -0.55
CLK3-221ENST00000568139 MGST1P10620 155 aaKnown RBP11.59□□□□□ -0.55
CLK3-221ENST00000568139 KRTAP10-4P60372 401 aaPredicted RBP11.59□□□□□ -0.55
CLK3-221ENST00000568139 SCXQ7RTU7 201 aa11.59□□□□□ -0.55
CLK3-221ENST00000568139 C9orf85Q96MD7 179 aa11.59□□□□□ -0.55
CLK3-221ENST00000568139 CCDC32Q9BV29 185 aa11.59□□□□□ -0.55
CLK3-221ENST00000568139 C11orf21Q9P2W6 132 aa11.59□□□□□ -0.55
CLK3-221ENST00000568139 PGPEP1LA6NFU8 196 aa11.58□□□□□ -0.56
CLK3-221ENST00000568139 PQLC2Q6ZP29 291 aa11.58□□□□□ -0.56
CLK3-221ENST00000568139 SYT8Q8NBV8 401 aa11.58□□□□□ -0.56
CLK3-221ENST00000568139 ZNF80P51504 273 aaPredicted RBP11.57□□□□□ -0.56
CLK3-221ENST00000568139 GNG5P63218 68 aa11.57□□□□□ -0.56
CLK3-221ENST00000568139 CYCSP99999 105 aaKnown RBP11.57□□□□□ -0.56
CLK3-221ENST00000568139 TOR2AQ5JU69 321 aa11.57□□□□□ -0.56
CLK3-221ENST00000568139 ZNF506Q5JVG8 444 aa11.57□□□□□ -0.56
CLK3-221ENST00000568139 DAZ4Q86SG3 579 aaKnown RBP11.57□□□□□ -0.56
CLK3-221ENST00000568139 SH3BGRL3Q9H299 93 aa11.57□□□□□ -0.56
CLK3-221ENST00000568139 DAZ3Q9NR90 486 aaKnown RBP11.57□□□□□ -0.56
CLK3-221ENST00000568139 HSPB11Q9Y547 144 aa11.57□□□□□ -0.56
CLK3-221ENST00000568139 LRP1Q07954 4544 aaKnown RBP11.56□□□□□ -0.56
CLK3-221ENST00000568139 TAAR5O14804 337 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 OXTP01178 125 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 LINC00694P0DN24 101 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 ASAH1Q13510 395 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 LINC01620Q4KN68 170 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 MZT2BQ6NZ67 158 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 SCGB1C1Q8TD33 95 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 BAALCQ8WXS3 180 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 COX11Q9Y6N1 276 aa11.56□□□□□ -0.56
CLK3-221ENST00000568139 RNASE3P12724 160 aaKnown RBP11.55□□□□□ -0.56
CLK3-221ENST00000568139 SGK494Q96LW2 274 aa11.55□□□□□ -0.56
CLK3-221ENST00000568139 NDFIP1Q9BT67 221 aa11.55□□□□□ -0.56
CLK3-221ENST00000568139 CHAC1Q9BUX1 264 aa11.55□□□□□ -0.56
CLK3-221ENST00000568139 SERTM2A0A1B0GWG4 89 aa11.54□□□□□ -0.56
CLK3-221ENST00000568139 GGTLC3B5MD39 225 aa11.54□□□□□ -0.56
CLK3-221ENST00000568139 ACOT6Q3I5F7 207 aaPredicted RBP11.54□□□□□ -0.56
CLK3-221ENST00000568139 Q8N976 141 aa11.54□□□□□ -0.56
CLK3-221ENST00000568139 PPP1R1CQ8WVI7 109 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 128 ms