RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 OTOGQ6ZRI0 2925 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 IGHV4OR15-8A0A075B7B6 117 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 A0A087WW49 117 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 NPYP01303 97 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 IGLC6P0CF74 106 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 FAM104BQ5XKR9 115 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 PRELID3AQ96N28 172 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 ZNF702PQ9H963 129 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 SOCS3O14543 225 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 SPATA45Q537H7 98 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 Q6YL49 198 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 PSMG3-AS1Q96PY0 264 aa8.38□□□□□ -1.07
CUX1-212ENST00000547394 CKS2P33552 79 aa8.37□□□□□ -1.07
CUX1-212ENST00000547394 SMPXQ9UHP9 88 aa8.37□□□□□ -1.07
CUX1-212ENST00000547394 LEPROTL1O95214 131 aa8.37□□□□□ -1.07
CUX1-212ENST00000547394 C9orf139Q6ZV77 190 aa8.37□□□□□ -1.07
CUX1-212ENST00000547394 SIGLEC8Q9NYZ4 499 aa8.37□□□□□ -1.07
CUX1-212ENST00000547394 J3QLI3 93 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 OR10J6PQ8NGY7 276 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 FN1P02751 2386 aaKnown RBP8.36□□□□□ -1.07
CUX1-212ENST00000547394 M0R381 172 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 GNRH2O43555 120 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 CTRLP40313 264 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 SLURP1P55000 103 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 C9orf47Q6ZRZ4 202 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 FA2HQ7L5A8 372 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 ZFAND2AQ8N6M9 145 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 AP5S1Q9NUS5 200 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 ANK3Q12955 4377 aaKnown RBP8.36□□□□□ -1.07
CUX1-212ENST00000547394 TRAV12-2A0A075B6T6 113 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 hDV102S1A0JD36 115 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 H3BUA1 57 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 PSMG4Q5JS54 123 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 Q6AWC8 147 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 COX8CQ7Z4L0 72 aa8.36□□□□□ -1.07
CUX1-212ENST00000547394 HIVEP2P31629 2446 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 RBAKDNA6NC62 111 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 FSHBP01225 129 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 LINC01559Q495D7 138 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 DMRTA1Q5VZB9 504 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 ORMDL3Q8N138 153 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 OR8A1Q8NGG7 326 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 RNF185Q96GF1 192 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 A0A1W2PRX2 142 aa8.35□□□□□ -1.07
CUX1-212ENST00000547394 HOXD3P31249 432 aaPredicted RBP8.35□□□□□ -1.07
CUX1-212ENST00000547394 FLNBO75369 2602 aaKnown RBP8.34□□□□□ -1.07
CUX1-212ENST00000547394 ANXA2RQ3ZCQ2 193 aa8.34□□□□□ -1.07
CUX1-212ENST00000547394 SPANXN1Q5VSR9 72 aa8.34□□□□□ -1.07
CUX1-212ENST00000547394 ZNF493Q6ZR52 646 aa8.34□□□□□ -1.07
CUX1-212ENST00000547394 C18orf15Q96N68 181 aa8.34□□□□□ -1.07
CUX1-212ENST00000547394 TMEM70Q9BUB7 260 aa8.34□□□□□ -1.07
CUX1-212ENST00000547394 MS4A6AQ9H2W1 248 aa8.34□□□□□ -1.07
CUX1-212ENST00000547394 A0A096LNJ9 63 aa8.34□□□□□ -1.07
CUX1-212ENST00000547394 SYS1-DBNDD2H3BUS1 97 aa8.33□□□□□ -1.08
CUX1-212ENST00000547394 DCANP1Q8TF63 244 aa8.33□□□□□ -1.08
CUX1-212ENST00000547394 TRAV12-3A0A0B4J271 114 aa8.33□□□□□ -1.08
CUX1-212ENST00000547394 OR4C46A6NHA9 309 aa8.33□□□□□ -1.08
CUX1-212ENST00000547394 RPS20P60866 119 aaKnown RBP8.33□□□□□ -1.08
CUX1-212ENST00000547394 MRPL52Q86TS9 123 aaKnown RBP8.33□□□□□ -1.08
CUX1-212ENST00000547394 KLHDC1Q8N7A1 406 aa8.33□□□□□ -1.08
CUX1-212ENST00000547394 CHCHD1Q96BP2 118 aaKnown RBP8.33□□□□□ -1.08
CUX1-212ENST00000547394 SMR3AQ99954 134 aa8.33□□□□□ -1.08
CUX1-212ENST00000547394 PRM2P04554 102 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 PLA2G2AP14555 144 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 IGLL1P15814 213 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 S100A4P26447 101 aaKnown RBP8.32□□□□□ -1.08
CUX1-212ENST00000547394 TCTEX1D4Q5JR98 221 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 COL5A1-AS1Q5SY13 56 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 Q6ZN92 141 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 C2CD3Q4AC94 2353 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 GAGE1Q13065 139 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 VWFP04275 2813 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 FBLL1A6NHQ2 334 aaKnown RBP8.32□□□□□ -1.08
CUX1-212ENST00000547394 SNAI2O43623 268 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 OR5AL1P0C617 328 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 HTN1P15515 57 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 SRSF2Q01130 221 aaKnown RBP8.32□□□□□ -1.08
CUX1-212ENST00000547394 STPG4Q8N801 248 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 ATP6V0BQ99437 205 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 TMEM191AQ9H0A3 160 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 JPT2Q9H910 190 aa8.32□□□□□ -1.08
CUX1-212ENST00000547394 MUC4Q99102 2169 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 A0A1B0GW15 77 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 TCF21O43680 179 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 LGALS1P09382 135 aaKnown RBP8.31□□□□□ -1.08
CUX1-212ENST00000547394 IGLC3P0DOY3 106 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 HNRNPA3P51991 378 aaKnown RBP8.31□□□□□ -1.08
CUX1-212ENST00000547394 C21orf62-AS1Q17RA5 79 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 ADAMTSL5Q6ZMM2 481 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 C14orf178Q8N769 122 aaPredicted RBP8.31□□□□□ -1.08
CUX1-212ENST00000547394 MRPL53Q96EL3 112 aaKnown RBP8.31□□□□□ -1.08
CUX1-212ENST00000547394 ESM1Q9NQ30 184 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 OVOL1O14753 267 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 TNFRSF6BO95407 300 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 GATD1Q8NB37 220 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 OR11H1Q8NG94 326 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 LINC00477Q96M19 166 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 UQCR10Q9UDW1 63 aa8.31□□□□□ -1.08
CUX1-212ENST00000547394 BRI3O95415 125 aa8.3□□□□□ -1.08
CUX1-212ENST00000547394 SPINK13Q1W4C9 94 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms