RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PPP1R27Q86WC6 154 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 GAGE2DQ9UEU5 116 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 CR1P17927 2039 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 VPS13CQ709C8 3753 aa4.1□□□□□ -1.75
USP28-213ENST00000544967 IGKV2D-26A0A0A0MRZ7 120 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 SRRM5B3KS81 715 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 NPYP01303 97 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 RBP4P02753 201 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 ZNF415Q09FC8 603 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 C4orf26Q17RF5 130 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 ZNF833PQ6ZTB9 187 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 NFE4Q86UQ8 179 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 Q8N8P6 123 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 CARD19Q96LW7 228 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 CALYQ9NYX4 217 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 CELSR2Q9HCU4 2923 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 K7ERJ3 54 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 IGLC6P0CF74 106 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 SAA2P0DJI9 122 aaPredicted RBP4.09□□□□□ -1.75
USP28-213ENST00000544967 INSL3P51460 131 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 LINC01560Q8TB33 94 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 IMUPQ9GZP8 106 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 DKK2Q9UBU2 259 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 RP1L1Q8IWN7 2480 aaPredicted RBP4.09□□□□□ -1.75
USP28-213ENST00000544967 COL12A1Q99715 3063 aa4.09□□□□□ -1.75
USP28-213ENST00000544967 A0A1B0GX51 115 aa4.09□□□□□ -1.76
USP28-213ENST00000544967 ATP5G1P05496 136 aa4.09□□□□□ -1.76
USP28-213ENST00000544967 LOXL1Q08397 574 aaPredicted RBP4.09□□□□□ -1.76
USP28-213ENST00000544967 RPL39P5Q59GN2 51 aa4.09□□□□□ -1.76
USP28-213ENST00000544967 AMN1Q8IY45 258 aa4.09□□□□□ -1.76
USP28-213ENST00000544967 UBALD1Q8TB05 177 aa4.09□□□□□ -1.76
USP28-213ENST00000544967 SRSF12Q8WXF0 261 aaKnown RBP4.09□□□□□ -1.76
USP28-213ENST00000544967 F11RQ9Y624 299 aaKnown RBP4.09□□□□□ -1.76
USP28-213ENST00000544967 B5MCH6 92 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 SNCGO76070 127 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 P0DMU3 169 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 FAM231AP0DMU4 169 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 FAM231CP0DMU5 169 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 TMEM78Q5T7P6 136 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 DUX4L9Q6RFH8 374 aaPredicted RBP4.08□□□□□ -1.76
USP28-213ENST00000544967 FAM19A1Q7Z5A9 133 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 DNAJC30Q96LL9 226 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 HIST1H4GQ99525 98 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 FBXL15Q9H469 300 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 CSMD2Q7Z408 3487 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 IGLV2-18A0A075B6J9 118 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 DSCR9P59020 149 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 C17orf58Q2M2W7 97 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 ZC2HC1BQ5TFG8 222 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 VKORC1L1Q8N0U8 176 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 CD177Q8N6Q3 437 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 DUX3Q96PT4 197 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 PRRC2AP48634 2157 aaKnown RBP4.08□□□□□ -1.76
USP28-213ENST00000544967 PTPN13Q12923 2485 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 KRTAP10-9P60411 292 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 HES1Q14469 280 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 DEFB113Q30KQ7 82 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 RASL11BQ9BPW5 248 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 HIGD1AQ9Y241 93 aa4.08□□□□□ -1.76
USP28-213ENST00000544967 IGHV3-43A0A0B4J1X8 118 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 TRBV7-7A0A0K0K1E9 115 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 F8VRH5 84 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 H7C1H1 209 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 IGHV3-9P01782 118 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 FAM106CPP0CH98 169 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 SAA1P0DJI8 122 aaPredicted RBP4.07□□□□□ -1.76
USP28-213ENST00000544967 SCGB1C2P0DMR2 95 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 IGHV3-43DP0DP04 118 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 CD24P25063 80 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 CKS2P33552 79 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 RPS28P62857 69 aaKnown RBP4.07□□□□□ -1.76
USP28-213ENST00000544967 FAM106AQ4KMX7 169 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 TTC32Q5I0X7 151 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 PAPPA-AS1Q5QFB9 102 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 LINC00311Q8N616 119 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 FANCD2OSQ96PS1 177 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 SIGLEC9Q9Y336 463 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 TRBV19A0A075B6N1 114 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 NDUFA7O95182 113 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 PLAUP00749 431 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 CD7P09564 240 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 LINC00205P59089 165 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 DEFB121Q5J5C9 76 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 SETXQ7Z333 2677 aaKnown RBP4.07□□□□□ -1.76
USP28-213ENST00000544967 LHBP01229 141 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 MYOD1P15172 320 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 Q8N1Y9 231 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 KLF14Q8TD94 323 aaPredicted RBP4.07□□□□□ -1.76
USP28-213ENST00000544967 RNF185Q96GF1 192 aa4.07□□□□□ -1.76
USP28-213ENST00000544967 RPUSD1Q9UJJ7 312 aaKnown RBP4.07□□□□□ -1.76
USP28-213ENST00000544967 ANKHD1Q8IWZ3 2542 aaKnown RBP4.06□□□□□ -1.76
USP28-213ENST00000544967 ARFGEF3Q5TH69 2177 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 SVILO95425 2214 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 IGHV4-4A0A075B6R2 117 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 HLA-DMBP28068 263 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 LEPP41159 167 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 DIAPH2-AS1Q14236 149 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 FAM53AQ6NSI3 398 aaPredicted RBP4.06□□□□□ -1.76
USP28-213ENST00000544967 LYZL1Q6UWQ5 148 aa4.06□□□□□ -1.76
USP28-213ENST00000544967 SHANK2-AS3Q9BTD1 123 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms