RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 OR4C46A6NHA9 309 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 H3BVH4 76 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 K7EMT4 169 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 LBHQ53QV2 105 aaPredicted RBP12.33□□□□□ -0.44
COL4A1-204ENST00000543140 KRTAP1-3Q8IUG1 177 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 MAP1LC3CQ9BXW4 147 aa12.33□□□□□ -0.44
COL4A1-204ENST00000543140 TRAV9-2A0A087WT02 112 aa12.32□□□□□ -0.44
COL4A1-204ENST00000543140 CRXO43186 299 aaPredicted RBP12.32□□□□□ -0.44
COL4A1-204ENST00000543140 ZNF25P17030 456 aaPredicted RBP12.32□□□□□ -0.44
COL4A1-204ENST00000543140 RNASE4P34096 147 aaKnown RBP12.32□□□□□ -0.44
COL4A1-204ENST00000543140 PMCHL2Q9BQD1 86 aa12.32□□□□□ -0.44
COL4A1-204ENST00000543140 HSPB8Q9UJY1 196 aa12.32□□□□□ -0.44
COL4A1-204ENST00000543140 LENEPQ9Y5L5 61 aa12.32□□□□□ -0.44
COL4A1-204ENST00000543140 IGLC3P0DOY3 106 aa12.32□□□□□ -0.44
COL4A1-204ENST00000543140 GATA1P15976 413 aaPredicted RBP12.32□□□□□ -0.44
COL4A1-204ENST00000543140 WFDC12Q8WWY7 111 aa12.32□□□□□ -0.44
COL4A1-204ENST00000543140 A0A096LNJ9 63 aa12.31□□□□□ -0.44
COL4A1-204ENST00000543140 IGLL1P15814 213 aa12.31□□□□□ -0.44
COL4A1-204ENST00000543140 SYNJ2BPP57105 145 aa12.31□□□□□ -0.44
COL4A1-204ENST00000543140 UFC1Q9Y3C8 167 aa12.31□□□□□ -0.44
COL4A1-204ENST00000543140 FLNAP21333 2647 aaKnown RBP12.31□□□□□ -0.44
COL4A1-204ENST00000543140 SPANXN1Q5VSR9 72 aa12.31□□□□□ -0.44
COL4A1-204ENST00000543140 DMRTA1Q5VZB9 504 aa12.31□□□□□ -0.44
COL4A1-204ENST00000543140 DCANP1Q8TF63 244 aa12.3□□□□□ -0.44
COL4A1-204ENST00000543140 ZNF747Q9BV97 191 aa12.3□□□□□ -0.44
COL4A1-204ENST00000543140 IGHV4OR15-8A0A075B7B6 117 aa12.3□□□□□ -0.44
COL4A1-204ENST00000543140 A0A087WW49 117 aa12.3□□□□□ -0.44
COL4A1-204ENST00000543140 TMEM89A2RUT3 159 aa12.3□□□□□ -0.44
COL4A1-204ENST00000543140 UQCR10Q9UDW1 63 aa12.3□□□□□ -0.44
COL4A1-204ENST00000543140 hDV102S1A0JD36 115 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 TCF21O43680 179 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 Q6ZN92 141 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 KLHDC1Q8N7A1 406 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 WFDC11Q8NEX6 87 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 AGRNO00468 2067 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 TRAV26-2A0A0B4J265 109 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 TRAV21A0A0B4J279 112 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 C20orf202A1L168 122 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 MS4A6AQ9H2W1 248 aa12.29□□□□□ -0.44
COL4A1-204ENST00000543140 TNFRSF6BO95407 300 aa12.28□□□□□ -0.44
COL4A1-204ENST00000543140 LGALS1P09382 135 aaKnown RBP12.28□□□□□ -0.44
COL4A1-204ENST00000543140 ZNF688P0C7X2 276 aa12.28□□□□□ -0.44
COL4A1-204ENST00000543140 ANXA2RQ3ZCQ2 193 aa12.28□□□□□ -0.44
COL4A1-204ENST00000543140 ID1P41134 155 aa12.28□□□□□ -0.44
COL4A1-204ENST00000543140 C18orf65Q6ZTR6 163 aa12.28□□□□□ -0.44
COL4A1-204ENST00000543140 FAM19A4Q96LR4 140 aa12.28□□□□□ -0.44
COL4A1-204ENST00000543140 M0R381 172 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 PPBPP02775 128 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 ELANEP08246 267 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 S100A4P26447 101 aaKnown RBP12.27□□□□□ -0.45
COL4A1-204ENST00000543140 HOXD3P31249 432 aaPredicted RBP12.27□□□□□ -0.45
COL4A1-204ENST00000543140 DEFB136Q30KP8 78 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 PET117Q6UWS5 81 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 MAP1LC3AQ9H492 121 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 GNRH2O43555 120 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 SNAI2O43623 268 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 NPSP0C0P6 89 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 PSMG4Q5JS54 123 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 SMIM15Q7Z3B0 74 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 TP73-AS1Q9UF72 201 aa12.27□□□□□ -0.45
COL4A1-204ENST00000543140 HIST2H2BDQ6DRA6 164 aa12.26□□□□□ -0.45
COL4A1-204ENST00000543140 UBE2E2Q96LR5 201 aa12.26□□□□□ -0.45
COL4A1-204ENST00000543140 IGKV3-20P01619 116 aa12.26□□□□□ -0.45
COL4A1-204ENST00000543140 MYOZ3Q8TDC0 251 aa12.26□□□□□ -0.45
COL4A1-204ENST00000543140 HNRNPA3P51991 378 aaKnown RBP12.25□□□□□ -0.45
COL4A1-204ENST00000543140 ACANP16112 2415 aa12.25□□□□□ -0.45
COL4A1-204ENST00000543140 HELZ2Q9BYK8 2649 aaKnown RBP12.25□□□□□ -0.45
COL4A1-204ENST00000543140 NF1P21359 2839 aa12.25□□□□□ -0.45
COL4A1-204ENST00000543140 HBDP02042 147 aa12.25□□□□□ -0.45
COL4A1-204ENST00000543140 LINC01545Q5VT33 79 aa12.25□□□□□ -0.45
COL4A1-204ENST00000543140 TMEM208Q9BTX3 173 aa12.25□□□□□ -0.45
COL4A1-204ENST00000543140 IGHV4-4A0A075B6R2 117 aa12.24□□□□□ -0.45
COL4A1-204ENST00000543140 ASIPP42127 132 aa12.24□□□□□ -0.45
COL4A1-204ENST00000543140 CACNG7P62955 275 aa12.24□□□□□ -0.45
COL4A1-204ENST00000543140 ITPR2Q14571 2701 aa12.24□□□□□ -0.45
COL4A1-204ENST00000543140 PHLDA3Q9Y5J5 127 aa12.24□□□□□ -0.45
COL4A1-204ENST00000543140 TSPOP30536 169 aa12.23□□□□□ -0.45
COL4A1-204ENST00000543140 SLURP1P55000 103 aa12.23□□□□□ -0.45
COL4A1-204ENST00000543140 Q6ZVH6 145 aa12.23□□□□□ -0.45
COL4A1-204ENST00000543140 OR2K2Q8NGT1 345 aa12.23□□□□□ -0.45
COL4A1-204ENST00000543140 DUX3Q96PT4 197 aa12.23□□□□□ -0.45
COL4A1-204ENST00000543140 MUC4Q99102 2169 aa12.23□□□□□ -0.45
COL4A1-204ENST00000543140 APRG1Q8IVJ8 170 aa12.22□□□□□ -0.45
COL4A1-204ENST00000543140 C18orf15Q96N68 181 aa12.22□□□□□ -0.45
COL4A1-204ENST00000543140 LAMTOR2Q9Y2Q5 125 aa12.22□□□□□ -0.45
COL4A1-204ENST00000543140 TRAV12-3A0A0B4J271 114 aa12.22□□□□□ -0.45
COL4A1-204ENST00000543140 HSBP1L1C9JCN9 74 aa12.22□□□□□ -0.45
COL4A1-204ENST00000543140 LEPP41159 167 aa12.22□□□□□ -0.45
COL4A1-204ENST00000543140 KHDC1LQ5JSQ8 128 aa12.22□□□□□ -0.45
COL4A1-204ENST00000543140 KLLNB2CW77 178 aa12.21□□□□□ -0.45
COL4A1-204ENST00000543140 SNRPD3P62318 126 aaKnown RBP12.21□□□□□ -0.45
COL4A1-204ENST00000543140 C14orf178Q8N769 122 aaPredicted RBP12.21□□□□□ -0.45
COL4A1-204ENST00000543140 K7EQG2 157 aa12.21□□□□□ -0.45
COL4A1-204ENST00000543140 LGALS9O00182 355 aa12.21□□□□□ -0.45
COL4A1-204ENST00000543140 RNF152Q8N8N0 203 aa12.21□□□□□ -0.45
COL4A1-204ENST00000543140 NRACQ8N912 160 aa12.21□□□□□ -0.45
COL4A1-204ENST00000543140 NXT2Q9NPJ8 142 aaKnown RBP12.21□□□□□ -0.45
COL4A1-204ENST00000543140 TRBV7-9A0A0J9YWB2 115 aa12.2□□□□□ -0.46
COL4A1-204ENST00000543140 RNASE3P12724 160 aaKnown RBP12.2□□□□□ -0.46
COL4A1-204ENST00000543140 SAMD13Q5VXD3 122 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms