RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 FAM229AH3BQW9 127 aa10.29□□□□□ -0.76
CLSTN3-213ENST00000541953 CSN1S1P47710 185 aa10.29□□□□□ -0.76
CLSTN3-213ENST00000541953 LINC01556Q5JQF7 62 aa10.29□□□□□ -0.76
CLSTN3-213ENST00000541953 C10orf126Q8N4M7 172 aa10.29□□□□□ -0.76
CLSTN3-213ENST00000541953 UBR4Q5T4S7 5183 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 M0R2P5 195 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 PSCAO43653 123 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 IGHV3-30P01768 117 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 IGHV3-33P01772 117 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 IGHV3-30-3P0DP02 117 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 IGHV3-30-5P0DP03 117 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 SLC25A29Q8N8R3 303 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 C11orf21Q9P2W6 132 aa10.28□□□□□ -0.76
CLSTN3-213ENST00000541953 FAM240BA0A1B0GVZ2 78 aa10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 PPT1P50897 306 aa10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 TIRAPP58753 221 aa10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 GNG5P63218 68 aa10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 FFAR4Q5NUL3 377 aa10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 NTN5Q8WTR8 489 aaPredicted RBP10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 SGK494Q96LW2 274 aa10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 LENEPQ9Y5L5 61 aa10.27□□□□□ -0.77
CLSTN3-213ENST00000541953 IGHV3-73A0A0B4J1V6 119 aa10.26□□□□□ -0.77
CLSTN3-213ENST00000541953 ZNF80P51504 273 aaPredicted RBP10.26□□□□□ -0.77
CLSTN3-213ENST00000541953 GOLT1AQ6ZVE7 132 aa10.26□□□□□ -0.77
CLSTN3-213ENST00000541953 TMEM75Q8N9X5 138 aa10.26□□□□□ -0.77
CLSTN3-213ENST00000541953 SMIM3Q9BZL3 60 aa10.26□□□□□ -0.77
CLSTN3-213ENST00000541953 PGPA6NDG6 321 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 LECT2O14960 151 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 H2BFSP57053 126 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 LINC01620Q4KN68 170 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 OR10J3Q5JRS4 329 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 CFAP126Q5VTH2 177 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 TMED6Q8WW62 240 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 ATP5SQ99766 215 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 NMES1Q9C002 83 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 OTORQ9NRC9 128 aa10.25□□□□□ -0.77
CLSTN3-213ENST00000541953 FBLL1A6NHQ2 334 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 J3QL48 77 aa10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 HMGB3O15347 200 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 KHDC3LQ587J8 217 aa10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 Q6ZSA8 131 aa10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 CCDC32Q9BV29 185 aa10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 WFDC1Q9HC57 220 aa10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 KCNIP2Q9NS61 270 aa10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 Q9UF83 564 aa10.24□□□□□ -0.77
CLSTN3-213ENST00000541953 TRAV21A0A0B4J279 112 aa10.23□□□□□ -0.77
CLSTN3-213ENST00000541953 RS1O15537 224 aa10.23□□□□□ -0.77
CLSTN3-213ENST00000541953 LINC00528Q8N1L1 170 aa10.23□□□□□ -0.77
CLSTN3-213ENST00000541953 DNAJC30Q96LL9 226 aa10.23□□□□□ -0.77
CLSTN3-213ENST00000541953 TREM1Q9NP99 234 aa10.23□□□□□ -0.77
CLSTN3-213ENST00000541953 MBD2Q9UBB5 411 aa10.23□□□□□ -0.77
CLSTN3-213ENST00000541953 HSPB11Q9Y547 144 aa10.23□□□□□ -0.77
CLSTN3-213ENST00000541953 C17orf112F2Z3M2 114 aa10.22□□□□□ -0.77
CLSTN3-213ENST00000541953 RAB2AP61019 212 aa10.22□□□□□ -0.77
CLSTN3-213ENST00000541953 ASAH1Q13510 395 aa10.22□□□□□ -0.77
CLSTN3-213ENST00000541953 PPP1R1CQ8WVI7 109 aa10.22□□□□□ -0.77
CLSTN3-213ENST00000541953 ASB13Q8WXK3 278 aa10.22□□□□□ -0.77
CLSTN3-213ENST00000541953 SDF2L1Q9HCN8 221 aa10.22□□□□□ -0.77
CLSTN3-213ENST00000541953 TRAV8-6A0A0B4J262 113 aa10.21□□□□□ -0.77
CLSTN3-213ENST00000541953 PGPEP1LA6NFU8 196 aa10.21□□□□□ -0.77
CLSTN3-213ENST00000541953 IFITM3Q01628 133 aa10.21□□□□□ -0.77
CLSTN3-213ENST00000541953 ZNF876PQ49A33 203 aa10.21□□□□□ -0.77
CLSTN3-213ENST00000541953 LELP1Q5T871 98 aa10.21□□□□□ -0.77
CLSTN3-213ENST00000541953 SH2D6Q7Z4S9 175 aa10.21□□□□□ -0.77
CLSTN3-213ENST00000541953 C9orf85Q96MD7 179 aa10.21□□□□□ -0.77
CLSTN3-213ENST00000541953 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 TRBV6-4A0A1B0GX49 114 aa10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 LINC00694P0DN24 101 aa10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 KRTAP10-4P60372 401 aaPredicted RBP10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 RHOHQ15669 191 aa10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 ZNF506Q5JVG8 444 aa10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 DAZ4Q86SG3 579 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 CMTM2Q8TAZ6 248 aa10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 DAZ3Q9NR90 486 aaKnown RBP10.2□□□□□ -0.78
CLSTN3-213ENST00000541953 KRTAP29-1A8MX34 341 aaPredicted RBP10.19□□□□□ -0.78
CLSTN3-213ENST00000541953 PFN1P07737 140 aaKnown RBP10.19□□□□□ -0.78
CLSTN3-213ENST00000541953 RNASE3P12724 160 aaKnown RBP10.19□□□□□ -0.78
CLSTN3-213ENST00000541953 TAS2R45P59539 299 aa10.19□□□□□ -0.78
CLSTN3-213ENST00000541953 GTSF1LQ9H1H1 148 aa10.19□□□□□ -0.78
CLSTN3-213ENST00000541953 MPC2O95563 127 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 IGLV2-11P01706 119 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 C1QBP02746 253 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 LAGE3Q14657 143 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 MZT2BQ6NZ67 158 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 SCXQ7RTU7 201 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 ATP6V0E2Q8NHE4 81 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 KCNS1Q96KK3 526 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 PRADC1Q9BSG0 188 aa10.18□□□□□ -0.78
CLSTN3-213ENST00000541953 GCGP01275 180 aa10.17□□□□□ -0.78
CLSTN3-213ENST00000541953 ARL14EPLP0DKL9 152 aa10.17□□□□□ -0.78
CLSTN3-213ENST00000541953 RPL12P30050 165 aaKnown RBP10.17□□□□□ -0.78
CLSTN3-213ENST00000541953 ENKURQ8TC29 256 aa10.17□□□□□ -0.78
CLSTN3-213ENST00000541953 JPT2Q9H910 190 aa10.17□□□□□ -0.78
CLSTN3-213ENST00000541953 GAGE12JA6NER3 117 aa10.16□□□□□ -0.78
CLSTN3-213ENST00000541953 GAGE1Q13065 139 aa10.16□□□□□ -0.78
CLSTN3-213ENST00000541953 GAGE4Q13068 117 aa10.16□□□□□ -0.78
CLSTN3-213ENST00000541953 GAGE5Q13069 117 aa10.16□□□□□ -0.78
CLSTN3-213ENST00000541953 GAGE13Q4V321 117 aa10.16□□□□□ -0.78
CLSTN3-213ENST00000541953 PQLC2Q6ZP29 291 aa10.16□□□□□ -0.78
CLSTN3-213ENST00000541953 SCGB1C1Q8TD33 95 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms