RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 KIR3DS1Q14943 382 aa15.47■□□□□ 0.07
VPS28-209ENST00000528142 DNLZQ5SXM8 178 aa15.47■□□□□ 0.07
VPS28-209ENST00000528142 A0A0J9YX75 114 aa15.47■□□□□ 0.07
VPS28-209ENST00000528142 NDUFA7O95182 113 aa15.47■□□□□ 0.07
VPS28-209ENST00000528142 TWIST1Q15672 202 aa15.47■□□□□ 0.07
VPS28-209ENST00000528142 FAM104BQ5XKR9 115 aa15.47■□□□□ 0.07
VPS28-209ENST00000528142 CITED2Q99967 270 aaPredicted RBP15.47■□□□□ 0.07
VPS28-209ENST00000528142 RNASE4P34096 147 aaKnown RBP15.46■□□□□ 0.07
VPS28-209ENST00000528142 URB1-AS1Q96HZ7 61 aa15.46■□□□□ 0.07
VPS28-209ENST00000528142 MSRB1Q9NZV6 116 aa15.46■□□□□ 0.07
VPS28-209ENST00000528142 CD33P20138 364 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 ODF3Q96PU9 254 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 JMJD8Q96S16 334 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 SAMD10Q9BYL1 202 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 TRAV2A0A0B4J234 112 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 A0A1W2PRX2 142 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 SNAI2O43623 268 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 ZNF324O75467 553 aaPredicted RBP15.45■□□□□ 0.06
VPS28-209ENST00000528142 OR5AL1P0C617 328 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 AMN1Q8IY45 258 aa15.45■□□□□ 0.06
VPS28-209ENST00000528142 TSSC4Q9Y5U2 329 aaPredicted RBP15.45■□□□□ 0.06
VPS28-209ENST00000528142 Q6ZWC4 215 aa15.44■□□□□ 0.06
VPS28-209ENST00000528142 NIT1Q86X76 327 aa15.44■□□□□ 0.06
VPS28-209ENST00000528142 TMEM191AQ9H0A3 160 aa15.44■□□□□ 0.06
VPS28-209ENST00000528142 U3KQK5 164 aa15.44■□□□□ 0.06
VPS28-209ENST00000528142 CCL24O00175 119 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 DMRTA1Q5VZB9 504 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 TMEM61Q8N0U2 210 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 PCP4L1A6NKN8 68 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 AMTP48728 403 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 DEFB114Q30KQ6 69 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 EBLN2Q6P2I7 272 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 NAGKQ9UJ70 344 aa15.43■□□□□ 0.06
VPS28-209ENST00000528142 IGHV4-4A0A075B6R2 117 aa15.42■□□□□ 0.06
VPS28-209ENST00000528142 ANXA2RQ3ZCQ2 193 aa15.42■□□□□ 0.06
VPS28-209ENST00000528142 FOXI2Q6ZQN5 318 aa15.42■□□□□ 0.06
VPS28-209ENST00000528142 OR10AG1Q8NH19 301 aa15.42■□□□□ 0.06
VPS28-209ENST00000528142 PMCHP20382 165 aa15.41■□□□□ 0.06
VPS28-209ENST00000528142 PROK1P58294 105 aa15.41■□□□□ 0.06
VPS28-209ENST00000528142 MRPL51Q4U2R6 128 aaKnown RBP15.41■□□□□ 0.06
VPS28-209ENST00000528142 RNF114Q9Y508 228 aa15.41■□□□□ 0.06
VPS28-209ENST00000528142 LEPP41159 167 aa15.4■□□□□ 0.06
VPS28-209ENST00000528142 RNASEKQ6P5S7 137 aaKnown RBP15.4■□□□□ 0.06
VPS28-209ENST00000528142 FAM19A2Q8N3H0 131 aa15.4■□□□□ 0.06
VPS28-209ENST00000528142 DYNLRB2Q8TF09 96 aa15.4■□□□□ 0.06
VPS28-209ENST00000528142 RNF185Q96GF1 192 aa15.4■□□□□ 0.06
VPS28-209ENST00000528142 CRLF1O75462 422 aa15.4■□□□□ 0.06
VPS28-209ENST00000528142 DUSP14O95147 198 aaKnown RBP15.4■□□□□ 0.06
VPS28-209ENST00000528142 D6R8Y8 96 aa15.39■□□□□ 0.05
VPS28-209ENST00000528142 H3BVH4 76 aa15.39■□□□□ 0.05
VPS28-209ENST00000528142 HSBP1O75506 76 aa15.39■□□□□ 0.05
VPS28-209ENST00000528142 CACNG7P62955 275 aa15.39■□□□□ 0.05
VPS28-209ENST00000528142 CHCHD1Q96BP2 118 aaKnown RBP15.39■□□□□ 0.05
VPS28-209ENST00000528142 RAB4AP20338 218 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 GSN-AS1Q9NRJ2 163 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 C7orf71A4D174 169 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 LINC00614P0C842 121 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 MED14OSP0DP75 135 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 ASIPP42127 132 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 CD300EQ496F6 205 aaPredicted RBP15.38■□□□□ 0.05
VPS28-209ENST00000528142 AMTNQ6UX39 209 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 ORMDL3Q8N138 153 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 SCRT2Q9NQ03 307 aa15.38■□□□□ 0.05
VPS28-209ENST00000528142 ADARB2-AS1A8MUL3 147 aa15.37■□□□□ 0.05
VPS28-209ENST00000528142 GNRH2O43555 120 aa15.37■□□□□ 0.05
VPS28-209ENST00000528142 IGKV3-20P01619 116 aa15.37■□□□□ 0.05
VPS28-209ENST00000528142 DEFB131AP59861 70 aa15.37■□□□□ 0.05
VPS28-209ENST00000528142 SIGLEC8Q9NYZ4 499 aa15.37■□□□□ 0.05
VPS28-209ENST00000528142 PRELID3AQ96N28 172 aa15.36■□□□□ 0.05
VPS28-209ENST00000528142 A8MTW9 85 aa15.36■□□□□ 0.05
VPS28-209ENST00000528142 CDKN1BP46527 198 aa15.36■□□□□ 0.05
VPS28-209ENST00000528142 S100A12P80511 92 aa15.36■□□□□ 0.05
VPS28-209ENST00000528142 SPANXN1Q5VSR9 72 aa15.36■□□□□ 0.05
VPS28-209ENST00000528142 TRAV12-3A0A0B4J271 114 aa15.35■□□□□ 0.05
VPS28-209ENST00000528142 TRAV25A0A0B4J276 109 aa15.35■□□□□ 0.05
VPS28-209ENST00000528142 KNCNA6PVL3 124 aa15.35■□□□□ 0.05
VPS28-209ENST00000528142 M0R2Z0 102 aa15.35■□□□□ 0.05
VPS28-209ENST00000528142 RNASE3P12724 160 aaKnown RBP15.35■□□□□ 0.05
VPS28-209ENST00000528142 EVI2AP22794 236 aa15.35■□□□□ 0.05
VPS28-209ENST00000528142 TSPOP30536 169 aa15.35■□□□□ 0.05
VPS28-209ENST00000528142 SPAG8Q99932 426 aaPredicted RBP15.35■□□□□ 0.05
VPS28-209ENST00000528142 ZNF256Q9Y2P7 627 aaPredicted RBP15.35■□□□□ 0.05
VPS28-209ENST00000528142 SCGB1D1O95968 90 aa15.34■□□□□ 0.05
VPS28-209ENST00000528142 S100A4P26447 101 aaKnown RBP15.34■□□□□ 0.05
VPS28-209ENST00000528142 CKS2P33552 79 aa15.34■□□□□ 0.05
VPS28-209ENST00000528142 TIMM8BQ9Y5J9 83 aaPredicted RBP15.34■□□□□ 0.05
VPS28-209ENST00000528142 TRAV12-2A0A075B6T6 113 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 SMKR1H3BMG3 65 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 TCF21O43680 179 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 HLA-DRB4P13762 266 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 SPINK13Q1W4C9 94 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 TDRG1Q3Y452 100 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 FAM159AQ6UWV7 190 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 MAP6D1Q9H9H5 199 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 HLA-DRB4X5D2U9 266 aa15.33■□□□□ 0.05
VPS28-209ENST00000528142 TEP1Q99973 2627 aaKnown RBP15.33■□□□□ 0.05
VPS28-209ENST00000528142 NIPBLQ6KC79 2804 aaeCLIP15.33■□□□□ 0.04
VPS28-209ENST00000528142 H3BMM0 161 aa15.33■□□□□ 0.04
VPS28-209ENST00000528142 PPBPP02775 128 aa15.33■□□□□ 0.04
VPS28-209ENST00000528142 IGHV1-24A0A0C4DH33 117 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms