RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 ATP5G3P48201 142 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 PSMB3P49720 205 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 ATP5G2Q06055 141 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 KLK9Q2XQG4 91 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 KHDC3LQ587J8 217 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 TMEM78Q5T7P6 136 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 C1orf195Q5TG92 126 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 ZFAND6Q6FIF0 208 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 LINC00305Q7Z4B0 112 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 LINC01551Q86U37 167 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 TEX29Q8N6K0 151 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 CYB561D1Q8N8Q1 229 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 OR4F5Q8NH21 305 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 VN1R17PQ8TDU5 208 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 EEF1AKMT3Q96AZ1 226 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 ZNF414Q96IQ9 312 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 FAM167A-AS1Q96KT0 104 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 OR4F4Q96R69 305 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 C20orf144Q9BQM9 153 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 SLC25A2Q9BXI2 301 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 MRPL32Q9BYC8 188 aaKnown RBP3.17□□□□□ -1.9
CD44-226ENST00000527889 SLC35B3Q9H1N7 401 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 MS4A6AQ9H2W1 248 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 CST9LQ9H4G1 147 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 TECRQ9NZ01 308 aaKnown RBP3.17□□□□□ -1.9
CD44-226ENST00000527889 THYN1Q9P016 225 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 KLK9Q9UKQ9 250 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 HIGD1AQ9Y241 93 aa3.17□□□□□ -1.9
CD44-226ENST00000527889 CMYA5Q8N3K9 4069 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 TRAV30A0A087WSZ9 112 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 WI2-2373I1.2A0A1W2PRP0 233 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 FAM231BA6NCW3 169 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 FAM223BA6NKX1 122 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 C11orf94C9JXX5 98 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 H3BRN7 92 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 J3KT08 172 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 ZNF207O43670 478 aaKnown RBP3.16□□□□□ -1.9
CD44-226ENST00000527889 GCGP01275 180 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 CTSGP08311 255 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 FOLR2P14207 255 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 EMP1P54849 157 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 TAS2R45P59539 299 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 YPEL3P61236 119 aaPredicted RBP3.16□□□□□ -1.9
CD44-226ENST00000527889 UBE2L3P68036 154 aaKnown RBP3.16□□□□□ -1.9
CD44-226ENST00000527889 MEF2BQ02080 365 aaPredicted RBP3.16□□□□□ -1.9
CD44-226ENST00000527889 OR5I1Q13606 314 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 GUCA2BQ16661 112 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 C10orf91Q5T1B1 145 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 ADAMTSL5Q6ZMM2 481 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 FAM223AQ8IWN6 122 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 ZNF491Q8N8L2 437 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 BLNKQ8WV28 456 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 GPR82Q96P67 336 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 RCHY1Q96PM5 261 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 PAXXQ9BUH6 204 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 C19orf24Q9BVV8 132 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 SLC25A39Q9BZJ4 359 aaPredicted RBP3.16□□□□□ -1.9
CD44-226ENST00000527889 MANBALQ9NQG1 85 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 VAX2Q9UIW0 290 aa3.16□□□□□ -1.9
CD44-226ENST00000527889 YTHDF2Q9Y5A9 579 aaKnown RBP3.16□□□□□ -1.9
CD44-226ENST00000527889 TRRAPQ9Y4A5 3859 aa3.15□□□□□ -1.9
CD44-226ENST00000527889 IGHV3OR16-13A0A075B7E8 117 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 IGHV3-49A0A0A0MS15 119 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 TRBV7-1A0A0A6YYK4 115 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 IGHV3-74A0A0B4J1X5 117 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 IGHV3-66A0A0C4DH42 116 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 A0A1W2PRE2 83 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 A8MWP6 167 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 H3BUA1 57 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 J3QR89 54 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 M0R2Z0 102 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 DNASE2O00115 360 aaPredicted RBP3.15□□□□□ -1.91
CD44-226ENST00000527889 BMPR1BO00238 502 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 PRSS2P07478 247 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 PRB4P10163 310 aaPredicted RBP3.15□□□□□ -1.91
CD44-226ENST00000527889 PSMB8P28062 276 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 XGP55808 180 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 SMAGPQ0VAQ4 97 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 C1orf194Q5T5A4 169 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 C18orf65Q6ZTR6 163 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 GTF2H5Q6ZYL4 71 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 TMEM86BQ8N661 226 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 OR4X2Q8NGF9 303 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 FXYD5Q96DB9 178 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 SHANK2-AS3Q9BTD1 123 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 DERL1Q9BUN8 251 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 SEC11CQ9BY50 192 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 PPDPFQ9H3Y8 114 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 TMEM167BQ9NRX6 74 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 MRPL16Q9NX20 251 aaKnown RBP3.15□□□□□ -1.91
CD44-226ENST00000527889 MRPL27Q9P0M9 148 aaKnown RBP3.15□□□□□ -1.91
CD44-226ENST00000527889 RABAC1Q9UI14 185 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 ZNF580Q9UK33 172 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 TP53TG1Q9Y2A0 90 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 CARHSP1Q9Y2V2 147 aaKnown RBP3.15□□□□□ -1.91
CD44-226ENST00000527889 SELENOKQ9Y6D0 94 aa3.15□□□□□ -1.91
CD44-226ENST00000527889 IGLV5-45A0A087WSX0 123 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 A0A0G2JLM5 398 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 CLPSL1A2RUU4 121 aa3.14□□□□□ -1.91
CD44-226ENST00000527889 ZNF727A8MUV8 499 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms