RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TMEM101Q96IK0 257 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 PRR25Q96S07 402 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 HEYLQ9NQ87 328 aaPredicted RBP6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 RABAC1Q9UI14 185 aa6.14□□□□□ -1.43
LIMCH1-219ENST00000514096 TRAV41A0A0B4J266 112 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 F8W1H4 67 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 HERVK_113P63121 156 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 TSKUQ8WUA8 353 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 COMMD5Q9GZQ3 224 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 C5orf66Q9H5L9 145 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 KLF12Q9Y4X4 402 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 C11orf94C9JXX5 98 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 TMEM250H0YL14 139 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 SAA1P0DJI8 122 aaPredicted RBP6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 ECI1P42126 302 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 RPL11P62913 178 aaKnown RBP6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 KIR2DL5BQ8NHK3 375 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 MEGF8Q7Z7M0 2845 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 RRHO14718 337 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 IAPPP10997 89 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 CRYBB3P26998 211 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 FOXI1Q12951 378 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 EBLN2Q6P2I7 272 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 AGMATQ9BSE5 352 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 VSIRQ9H7M9 311 aa6.13□□□□□ -1.43
LIMCH1-219ENST00000514096 IGHV3-66A0A0C4DH42 116 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 ERVK-16P61578 105 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 VMA21Q3ZAQ7 101 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 C9orf139Q6ZV77 190 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 TP53TG3Q9ULZ0 132 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 TRAV4A0A0B4J268 109 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FSTL3O95633 263 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 SYNJ2BPP57105 145 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 SPIN2AQ99865 258 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 SPIN2BQ9BPZ2 258 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 IGHV7-81A0A0B4J1V7 117 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A10PA6NDY2 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A18PA6NE21 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A16PA6NEW6 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A20PA6NIJ5 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A7PA6NKC0 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A22PA8MWA6 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A12PA8MX19 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A5PA8MXJ8 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A23PA8MXZ1 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 RHODO00212 210 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 TRBV12-3P01733 135 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A15PP0C7V4 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A13PP0C7W8 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A14PP0C7W9 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 FAM90A24PP0C7X0 464 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 WFDC3Q8IUB2 231 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 GATD1Q8NB37 220 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 LSM10Q969L4 123 aaKnown RBP6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 ZNF747Q9BV97 191 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 SLC25A39Q9BZJ4 359 aaPredicted RBP6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 C21orf62Q9NYP8 219 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 PRNDQ9UKY0 176 aa6.12□□□□□ -1.43
LIMCH1-219ENST00000514096 E7EUB6 86 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 DUTP33316 252 aaKnown RBP6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 GTSCR1Q86UQ5 136 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 SRSF12Q8WXF0 261 aaKnown RBP6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 LY6LH3BQJ8 138 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 CCL24O00175 119 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 RPL15P61313 204 aaKnown RBP6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 S100A7L2Q5SY68 101 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 CLEC19AQ6UXS0 136 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 Q6ZQT7 251 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 LINC00173Q6ZV60 143 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 MMD2Q8IY49 270 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 H7C2G1 150 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 ZNF137PP52743 207 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 MFAP2P55001 183 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 NMSQ5H8A3 153 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 TBC1D26Q86UD7 250 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 PYGO2Q9BRQ0 406 aa6.11□□□□□ -1.43
LIMCH1-219ENST00000514096 UBE2L5PA0A1B0GUS4 154 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 RBP4P02753 201 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 OR9G9P0C7N8 305 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 ZNF138P52744 262 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 SPANXN5Q5MJ07 72 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 TMEM86BQ8N661 226 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 TMEM252Q8N6L7 170 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 C15orf53Q8NAA6 179 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 PLEKHA3Q9HB20 300 aa6.1□□□□□ -1.43
LIMCH1-219ENST00000514096 NHLRC4P0CG21 123 aaPredicted RBP6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 ORM2P19652 201 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 RPL27AP46776 148 aaKnown RBP6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 SLC38A11Q08AI6 406 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 HOGA1Q86XE5 327 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 ZNF645Q8N7E2 425 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 Q8N976 141 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 TRAV1-1A0A0B4J248 108 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 WIPF1O43516 503 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 SSBP1Q04837 148 aaKnown RBP6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 DLX4Q92988 240 aaPredicted RBP6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 DSCR8Q96T75 97 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 TIRAPP58753 221 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 LINC00310P59036 64 aa6.09□□□□□ -1.43
LIMCH1-219ENST00000514096 CIRBPQ14011 172 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms