RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 RBAKDNA6NC62 111 aa13.29□□□□□ -0.28
SQSTM1-215ENST00000514093 TYMSP04818 313 aa13.29□□□□□ -0.28
SQSTM1-215ENST00000514093 ATP6V0E2Q8NHE4 81 aa13.29□□□□□ -0.28
SQSTM1-215ENST00000514093 NPCDR1Q9BY65 106 aa13.29□□□□□ -0.28
SQSTM1-215ENST00000514093 C5orf51A6NDU8 294 aa13.28□□□□□ -0.28
SQSTM1-215ENST00000514093 NAP1L6A6NFF2 107 aa13.28□□□□□ -0.28
SQSTM1-215ENST00000514093 INPP1P49441 399 aa13.28□□□□□ -0.28
SQSTM1-215ENST00000514093 RHOHQ15669 191 aa13.28□□□□□ -0.28
SQSTM1-215ENST00000514093 DPPA3Q6W0C5 159 aa13.28□□□□□ -0.28
SQSTM1-215ENST00000514093 TMEM252Q8N6L7 170 aa13.28□□□□□ -0.28
SQSTM1-215ENST00000514093 RS1O15537 224 aa13.27□□□□□ -0.29
SQSTM1-215ENST00000514093 NOL3O60936 208 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-215ENST00000514093 CFAP126Q5VTH2 177 aa13.27□□□□□ -0.29
SQSTM1-215ENST00000514093 DNAJC30Q96LL9 226 aa13.27□□□□□ -0.29
SQSTM1-215ENST00000514093 LYRM2Q9NU23 88 aaPredicted RBP13.27□□□□□ -0.29
SQSTM1-215ENST00000514093 TRBV6-4A0A1B0GX49 114 aa13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 S100A5P33763 92 aa13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 BTCP35070 178 aa13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 S100A10P60903 97 aa13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 RPL37AP61513 92 aaKnown RBP13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 ASAH1Q13510 395 aa13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 ACOT6Q3I5F7 207 aaPredicted RBP13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 THAP6Q8TBB0 222 aa13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 DAZAP1Q96EP5 407 aaKnown RBP13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 LENEPQ9Y5L5 61 aa13.26□□□□□ -0.29
SQSTM1-215ENST00000514093 RNF222A6NCQ9 220 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 DIRC3C9JPN6 131 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 PVALBP20472 110 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 HBG1P69891 147 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 HBG2P69892 147 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 ZNF876PQ49A33 203 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 STX12Q86Y82 276 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 Q8N976 141 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 HYLS1Q96M11 299 aa13.25□□□□□ -0.29
SQSTM1-215ENST00000514093 F6UZH7 168 aa13.24□□□□□ -0.29
SQSTM1-215ENST00000514093 OR7C2O60412 319 aa13.24□□□□□ -0.29
SQSTM1-215ENST00000514093 ATP6V1FQ16864 119 aa13.24□□□□□ -0.29
SQSTM1-215ENST00000514093 TRIQKQ629K1 86 aa13.24□□□□□ -0.29
SQSTM1-215ENST00000514093 SDF2L1Q9HCN8 221 aa13.24□□□□□ -0.29
SQSTM1-215ENST00000514093 RPH3ALQ9UNE2 315 aa13.24□□□□□ -0.29
SQSTM1-215ENST00000514093 TRAV21A0A0B4J279 112 aa13.23□□□□□ -0.29
SQSTM1-215ENST00000514093 GGTLC3B5MD39 225 aa13.23□□□□□ -0.29
SQSTM1-215ENST00000514093 LRP2P98164 4655 aa13.23□□□□□ -0.29
SQSTM1-215ENST00000514093 TOR2AQ5JU69 321 aa13.23□□□□□ -0.29
SQSTM1-215ENST00000514093 SPANXN2Q5MJ10 180 aa13.23□□□□□ -0.29
SQSTM1-215ENST00000514093 IGKV2D-24A0A075B6R9 120 aa13.22□□□□□ -0.29
SQSTM1-215ENST00000514093 MT1HL1P0DM35 61 aa13.22□□□□□ -0.29
SQSTM1-215ENST00000514093 C2orf50Q96LR7 162 aa13.22□□□□□ -0.29
SQSTM1-215ENST00000514093 COX11Q9Y6N1 276 aa13.22□□□□□ -0.29
SQSTM1-215ENST00000514093 GAGE12JA6NER3 117 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 GAGE1Q13065 139 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 GAGE4Q13068 117 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 GAGE5Q13069 117 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 RAB32Q13637 225 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 GAGE13Q4V321 117 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 ASB13Q8WXK3 278 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 TVP23CQ96ET8 276 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 ATP5SQ99766 215 aa13.21□□□□□ -0.29
SQSTM1-215ENST00000514093 UBE2L3P68036 154 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-215ENST00000514093 NHLH2Q02577 135 aa13.2□□□□□ -0.3
SQSTM1-215ENST00000514093 CENPXA8MT69 81 aa13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 CIDEAO60543 219 aa13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 EIF3GO75821 320 aaKnown RBP eCLIP13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 TMED6Q8WW62 240 aa13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 RMI2Q96E14 147 aa13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 KCNS1Q96KK3 526 aa13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 SEC22CQ9BRL7 303 aa13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 Q9UF83 564 aa13.19□□□□□ -0.3
SQSTM1-215ENST00000514093 TRAV8-1A0A0A6YYK1 113 aa13.18□□□□□ -0.3
SQSTM1-215ENST00000514093 PGPEP1LA6NFU8 196 aa13.18□□□□□ -0.3
SQSTM1-215ENST00000514093 IGLV2-11P01706 119 aa13.18□□□□□ -0.3
SQSTM1-215ENST00000514093 MGST1P10620 155 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-215ENST00000514093 GOLT1AQ6ZVE7 132 aa13.18□□□□□ -0.3
SQSTM1-215ENST00000514093 NMES1Q9C002 83 aa13.18□□□□□ -0.3
SQSTM1-215ENST00000514093 TREM1Q9NP99 234 aa13.18□□□□□ -0.3
SQSTM1-215ENST00000514093 PGPA6NDG6 321 aa13.17□□□□□ -0.3
SQSTM1-215ENST00000514093 IL15RAQ13261 267 aa13.17□□□□□ -0.3
SQSTM1-215ENST00000514093 ZNF506Q5JVG8 444 aa13.17□□□□□ -0.3
SQSTM1-215ENST00000514093 OR5C1Q8NGR4 320 aa13.17□□□□□ -0.3
SQSTM1-215ENST00000514093 SDHCQ99643 169 aaPredicted RBP13.17□□□□□ -0.3
SQSTM1-215ENST00000514093 C11orf21Q9P2W6 132 aa13.17□□□□□ -0.3
SQSTM1-215ENST00000514093 KLK12Q9UKR0 248 aa13.17□□□□□ -0.3
SQSTM1-215ENST00000514093 CMTM2Q8TAZ6 248 aa13.16□□□□□ -0.3
SQSTM1-215ENST00000514093 SGK494Q96LW2 274 aa13.16□□□□□ -0.3
SQSTM1-215ENST00000514093 TRAV6A0A075B6T7 132 aa13.15□□□□□ -0.3
SQSTM1-215ENST00000514093 LINC00694P0DN24 101 aa13.15□□□□□ -0.3
SQSTM1-215ENST00000514093 OR2T35Q8NGX2 323 aa13.15□□□□□ -0.3
SQSTM1-215ENST00000514093 UBE2WQ96B02 151 aa13.15□□□□□ -0.3
SQSTM1-215ENST00000514093 SAMD10Q9BYL1 202 aa13.15□□□□□ -0.3
SQSTM1-215ENST00000514093 SH3BGRL3Q9H299 93 aa13.15□□□□□ -0.3
SQSTM1-215ENST00000514093 URGCP-MRPS24S4R325 110 aa13.15□□□□□ -0.3
SQSTM1-215ENST00000514093 ZNF80P51504 273 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-215ENST00000514093 CYB561D1Q8N8Q1 229 aa13.14□□□□□ -0.31
SQSTM1-215ENST00000514093 TMEM75Q8N9X5 138 aa13.14□□□□□ -0.31
SQSTM1-215ENST00000514093 C9orf85Q96MD7 179 aa13.14□□□□□ -0.31
SQSTM1-215ENST00000514093 WDR61Q9GZS3 305 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-215ENST00000514093 OTORQ9NRC9 128 aa13.14□□□□□ -0.31
SQSTM1-215ENST00000514093 GNG5P63218 68 aa13.13□□□□□ -0.31
SQSTM1-215ENST00000514093 CNPY1Q3B7I2 92 aa13.13□□□□□ -0.31
SQSTM1-215ENST00000514093 NIT1Q86X76 327 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms