RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SDF2L1Q9HCN8 221 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 GSN-AS1Q9NRJ2 163 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 CELA1Q9UNI1 258 aa8.54□□□□□ -1.04
CUX1-210ENST00000497815 TENM3Q9P273 2699 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 PLAC8L1A1L4L8 177 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 SNURFLB1AK76 121 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 C9JCJ5 164 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 NDUFS6O75380 124 aaKnown RBP8.53□□□□□ -1.04
CUX1-210ENST00000497815 TYMSP04818 313 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 OR5I1Q13606 314 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 FAM222AQ5U5X8 452 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 COMMD7Q86VX2 200 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 OCC1Q8TAD7 63 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 KCNS1Q96KK3 526 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 SMDT1Q9H4I9 107 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 NOP10Q9NPE3 64 aaKnown RBP8.53□□□□□ -1.04
CUX1-210ENST00000497815 MDFICQ9P1T7 246 aa8.53□□□□□ -1.04
CUX1-210ENST00000497815 HUWE1Q7Z6Z7 4374 aaKnown RBP8.53□□□□□ -1.04
CUX1-210ENST00000497815 TRGV11A0A075B6L2 103 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 IGKV3D-20A0A0C4DH25 116 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 CXorf65A6NEN9 183 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 B4DEV8 164 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 SFTA3P0C7M3 94 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 NANOS2P60321 138 aaKnown RBP8.52□□□□□ -1.05
CUX1-210ENST00000497815 ZNF415Q09FC8 603 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 TDRG1Q3Y452 100 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 C11orf72Q8NBR9 251 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 C11orf45Q8TAV5 145 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 DAZAP1Q96EP5 407 aaKnown RBP8.52□□□□□ -1.05
CUX1-210ENST00000497815 SMIM12Q96EX1 92 aa8.52□□□□□ -1.05
CUX1-210ENST00000497815 TIMM8BQ9Y5J9 83 aaPredicted RBP8.52□□□□□ -1.05
CUX1-210ENST00000497815 IGHV3-16A0A0C4DH30 117 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 GRIFINA4D1Z8 144 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 KRBOX1C9JBD0 128 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 K7EN84 100 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 SPART-AS1P0CW21 52 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 RPL19P84098 196 aaKnown RBP8.51□□□□□ -1.05
CUX1-210ENST00000497815 SOHLH1Q5JUK2 328 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 IBA57Q5T440 356 aaKnown RBP8.51□□□□□ -1.05
CUX1-210ENST00000497815 IL17DQ8TAD2 202 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 DKK2Q9UBU2 259 aa8.51□□□□□ -1.05
CUX1-210ENST00000497815 DEFB130BP0DP73 79 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 DEFB130AP0DP74 79 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 TCL1AP56279 114 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 TMEM241Q24JQ0 296 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 LINC01559Q495D7 138 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 FAM74A3Q4VXF1 159 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 WWC2-AS2Q96NR7 200 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 BIN3Q9NQY0 253 aa8.5□□□□□ -1.05
CUX1-210ENST00000497815 TRGV1A0A0A0MS02 117 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 GAGE12BA1L429 117 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 LINC00862A6NCI5 91 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 C19orf71A6NCJ1 209 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 LYRM9A8MSI8 78 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 GAGE7O76087 117 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 P01737 135 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 GAGE12FP0CL80 117 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 GAGE12GP0CL81 117 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 GAGE12IP0CL82 117 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 S100A4P26447 101 aaKnown RBP8.49□□□□□ -1.05
CUX1-210ENST00000497815 ASIPP42127 132 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 Q6ZTI0 123 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 LINC01551Q86U37 167 aa8.49□□□□□ -1.05
CUX1-210ENST00000497815 RNASE7Q9H1E1 156 aaKnown RBP8.49□□□□□ -1.05
CUX1-210ENST00000497815 MRPL16Q9NX20 251 aaKnown RBP8.49□□□□□ -1.05
CUX1-210ENST00000497815 TEX48A0A1B0GUV7 120 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 H3BVH4 76 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 DAD1P61803 113 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 DAZ2Q13117 558 aaKnown RBP8.48□□□□□ -1.05
CUX1-210ENST00000497815 ADIRFQ15847 76 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 C12orf74Q32Q52 190 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 UQCC3Q6UW78 93 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 Q6ZTC4 211 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 NUDT10Q8NFP7 164 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 OR2D3Q8NGH3 330 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 NUDT11Q96G61 164 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 NAT8Q9UHE5 227 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 LY96Q9Y6Y9 160 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 TGP01266 2768 aa8.48□□□□□ -1.05
CUX1-210ENST00000497815 ARMS2P0C7Q2 107 aa8.47□□□□□ -1.05
CUX1-210ENST00000497815 GZMBP10144 247 aa8.47□□□□□ -1.05
CUX1-210ENST00000497815 RNASE3P12724 160 aaKnown RBP8.47□□□□□ -1.05
CUX1-210ENST00000497815 HTN3P15516 51 aa8.47□□□□□ -1.05
CUX1-210ENST00000497815 ERVFC1-1P60608 527 aa8.47□□□□□ -1.05
CUX1-210ENST00000497815 RPL23P62829 140 aaKnown RBP8.47□□□□□ -1.05
CUX1-210ENST00000497815 LCE2AQ5TA79 106 aaPredicted RBP8.47□□□□□ -1.05
CUX1-210ENST00000497815 SPXQ9BT56 116 aa8.47□□□□□ -1.05
CUX1-210ENST00000497815 TRGV2A0A075B6R0 118 aa8.46□□□□□ -1.06
CUX1-210ENST00000497815 GATCO43716 136 aaKnown RBP8.46□□□□□ -1.06
CUX1-210ENST00000497815 SPINK4O60575 86 aa8.46□□□□□ -1.06
CUX1-210ENST00000497815 ZFAND6Q6FIF0 208 aa8.46□□□□□ -1.06
CUX1-210ENST00000497815 ZNF575Q86XF7 245 aa8.46□□□□□ -1.06
CUX1-210ENST00000497815 C9orf85Q96MD7 179 aa8.46□□□□□ -1.06
CUX1-210ENST00000497815 TPPP3Q9BW30 176 aa8.46□□□□□ -1.06
CUX1-210ENST00000497815 RPP21Q9H633 154 aaKnown RBP8.46□□□□□ -1.06
CUX1-210ENST00000497815 TMEM218A2RU14 115 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 F8W036 122 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 M0R2P5 195 aa8.45□□□□□ -1.06
CUX1-210ENST00000497815 SMCPP49901 116 aaPredicted RBP8.45□□□□□ -1.06
CUX1-210ENST00000497815 RPS20P60866 119 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms