RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DNAJB13P59910 316 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 COX6A2Q02221 97 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 FAM231DQ6ZW35 169 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 TRMT10CQ7L0Y3 403 aaKnown RBP1.79□□□□□ -2.12
VPS13A-210ENST00000471439 FAM19A1Q7Z5A9 133 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 SYS1Q8N2H4 156 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 THEM6Q8WUY1 208 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 TAMM41Q96BW9 452 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 CMTM5Q96DZ9 223 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 PPP1R36Q96LQ0 422 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 LINC00052Q96N35 136 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 MRPL32Q9BYC8 188 aaKnown RBP1.79□□□□□ -2.12
VPS13A-210ENST00000471439 NXF2Q9GZY0 626 aaKnown RBP1.79□□□□□ -2.12
VPS13A-210ENST00000471439 ACOT13Q9NPJ3 140 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 C12orf4Q9NQ89 552 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 ANXA10Q9UJ72 324 aa1.79□□□□□ -2.12
VPS13A-210ENST00000471439 A8MTW9 85 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 E2F6O75461 281 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 TCRBP04435 133 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 CDK1P06493 297 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 TPM1P09493 284 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 NPPCP23582 126 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 HLA-DMAP28067 261 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 CDK10Q15131 360 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 LINC01590Q5TEZ4 76 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 SPATA31B1PQ5VZV4 182 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 Q6Q795 121 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 FP248Q71RG6 208 aaPredicted RBP1.78□□□□□ -2.12
VPS13A-210ENST00000471439 NEK7Q8TDX7 302 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 TVP23CQ96ET8 276 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 TXNDC17Q9BRA2 123 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 DOK5Q9P104 306 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 FUT9Q9Y231 359 aa1.78□□□□□ -2.12
VPS13A-210ENST00000471439 RBMX2Q9Y388 322 aaKnown RBP1.78□□□□□ -2.12
VPS13A-210ENST00000471439 LOC389332A0A1B0GUA5 103 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 K7EIM0 57 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 CREBL2O60519 120 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-210ENST00000471439 OR7C1O76099 320 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-210ENST00000471439 SPI1P17947 270 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 CRYBB3P26998 211 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 PRCDQ00LT1 54 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 SSX1Q16384 188 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 PDZD11Q5EBL8 140 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 EBLN2Q6P2I7 272 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 ZNF322Q6U7Q0 402 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-210ENST00000471439 KRTAP13-1Q8IUC0 172 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 OTOSQ8NHW6 89 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 CPNE2Q96FN4 548 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-210ENST00000471439 FMC1Q96HJ9 113 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 C2orf50Q96LR7 162 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 PRRG3Q9BZD7 231 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 SRRQ9GZT4 340 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 SDHAF2Q9NX18 166 aa1.77□□□□□ -2.13
VPS13A-210ENST00000471439 TRGV1A0A0A0MS02 117 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 IGLC7A0M8Q6 106 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 BOLA2-SMG1P6H3BVE0 249 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 FFAR1O14842 300 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 GATCO43716 136 aaKnown RBP1.76□□□□□ -2.13
VPS13A-210ENST00000471439 CRYZL1O95825 349 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 IGLV6-57P01721 117 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 HTR1AP08908 422 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 EIF2B2P49770 351 aaKnown RBP1.76□□□□□ -2.13
VPS13A-210ENST00000471439 AP2S1P53680 142 aaPredicted RBP1.76□□□□□ -2.13
VPS13A-210ENST00000471439 SLC18A1P54219 525 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 GPR176Q14439 515 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 KRTAP25-1Q3LHN0 102 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 Q499Y3 187 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 IDNKQ5T6J7 187 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 SSX6Q7RTT6 188 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 STX19Q8N4C7 294 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 UBE2WQ96B02 151 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 GALMQ96C23 342 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 TBX5Q99593 518 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 THTPAQ9BU02 230 aa1.76□□□□□ -2.13
VPS13A-210ENST00000471439 A0A096LNI7 61 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 A0A1B0GXF2 115 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 C9JQL5 133 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 K7EPK0 472 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 GEMIN2O14893 280 aaKnown RBP1.75□□□□□ -2.13
VPS13A-210ENST00000471439 NDUFS6O75380 124 aaKnown RBP1.75□□□□□ -2.13
VPS13A-210ENST00000471439 ATG12O94817 140 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 ORM1P02763 201 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 ATF1P18846 271 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 CCL1P22362 96 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 KDELR2P33947 212 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 NUP62P37198 522 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-210ENST00000471439 OMPP47874 163 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 MEF2BQ02080 365 aaPredicted RBP1.75□□□□□ -2.13
VPS13A-210ENST00000471439 OR10AC1Q8NH08 325 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 TSKUQ8WUA8 353 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 OR51E2Q9H255 320 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 SNX24Q9Y343 169 aa1.75□□□□□ -2.13
VPS13A-210ENST00000471439 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.74□□□□□ -2.13
VPS13A-210ENST00000471439 TRGV4A0A0C4DH28 118 aa1.74□□□□□ -2.13
VPS13A-210ENST00000471439 H3BQ85 93 aa1.74□□□□□ -2.13
VPS13A-210ENST00000471439 ITGB1BP1O14713 200 aa1.74□□□□□ -2.13
VPS13A-210ENST00000471439 TCAPO15273 167 aa1.74□□□□□ -2.13
VPS13A-210ENST00000471439 GYG2O15488 501 aa1.74□□□□□ -2.13
VPS13A-210ENST00000471439 GPX2P18283 190 aa1.74□□□□□ -2.13
VPS13A-210ENST00000471439 BLVRAP53004 296 aa1.74□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms