RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 ABCA3Q99758 1704 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 WIPF3A6NGB9 483 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 H3BUA1 57 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 KLHDC9Q8NEP7 349 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 STRCQ7RTU9 1775 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 IGHV1OR15-9A0A0B4J2B8 117 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 LYPD3O95274 346 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 C7orf65Q6ZTY9 151 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 SPRY4Q9C004 299 aa3.6□□□□□ -1.83
PTPN13-202ENST00000411767 COL22A1Q8NFW1 1626 aaPredicted RBP3.59□□□□□ -1.83
PTPN13-202ENST00000411767 LOXP28300 417 aaPredicted RBP3.59□□□□□ -1.83
PTPN13-202ENST00000411767 LINC00337Q8N6G1 96 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 KAAG1Q9UBP8 84 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 SPINK1P00995 79 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 ATRAIDQ6UW56 229 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 TREML4Q6UXN2 200 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 NOP10Q9NPE3 64 aaKnown RBP3.59□□□□□ -1.83
PTPN13-202ENST00000411767 C5P01031 1676 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 A0A096LPF7 62 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 H0Y8X5 98 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 CCDC179H3BU77 68 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 K7EN84 100 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 ERVH48-1M5A8F1 160 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 PSPHP1O15172 72 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 P0C879 139 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 NPBQ8NG41 125 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 FAM110DQ8TAY7 271 aaPredicted RBP3.59□□□□□ -1.83
PTPN13-202ENST00000411767 LINC01560Q8TB33 94 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 URB1O60287 2271 aaKnown RBP3.59□□□□□ -1.83
PTPN13-202ENST00000411767 H3BUX3 64 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 GLI3P10071 1580 aa3.59□□□□□ -1.83
PTPN13-202ENST00000411767 IGLV3-10A0A075B6K4 115 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 C11orf86A6NJI1 115 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 H7C423 109 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 TMEM14EPQ6UXP3 125 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 DEFB104AQ8WTQ1 72 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 AMELYQ99218 206 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 PAPPAQ13219 1627 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 DNAJC9-AS1A6NH13 148 aa3.59□□□□□ -1.84
PTPN13-202ENST00000411767 IGKV1-27A0A075B6S5 117 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 IGHV1-69P01742 117 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 C1QCP02747 245 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 CRYGAP11844 174 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 MUC7Q8TAX7 377 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 SHANK3Q9BYB0 1731 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 TRBV6-1A0A0K0K1D8 114 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 CRYBA2P53672 197 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 ZNF497Q6ZNH5 498 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 ATP11AUNQ6ZP68 121 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 KCPQ6ZWJ8 1503 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 IGKV1D-8A0A087WSZ0 117 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 RTBDNQ9BSG5 229 aaPredicted RBP3.58□□□□□ -1.84
PTPN13-202ENST00000411767 AFDNP55196 1824 aaKnown RBP3.58□□□□□ -1.84
PTPN13-202ENST00000411767 CCDC88AQ3V6T2 1871 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 SPINK2P20155 84 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 Q6JHZ5 121 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 DOCK10Q96BY6 2186 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 DIDO1Q9BTC0 2240 aaKnown RBP3.58□□□□□ -1.84
PTPN13-202ENST00000411767 NHSL1Q5SYE7 1610 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 IGKV2-29A2NJV5 120 aaPredicted RBP3.58□□□□□ -1.84
PTPN13-202ENST00000411767 TIAF1O95411 115 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 C16orf47Q6ZP98 133 aaPredicted RBP3.58□□□□□ -1.84
PTPN13-202ENST00000411767 LINC00208Q96KT6 92 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 LOC107984640A0A0U1RRK4 108 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 OVOL3O00110 214 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 SRSF3P84103 164 aaKnown RBP3.58□□□□□ -1.84
PTPN13-202ENST00000411767 BEAN1Q3B7T3 259 aa3.58□□□□□ -1.84
PTPN13-202ENST00000411767 RNASE8Q8TDE3 154 aaKnown RBP3.58□□□□□ -1.84
PTPN13-202ENST00000411767 MSMBP08118 114 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 MIAQ16674 131 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 ARFGEF2Q9Y6D5 1785 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 A0A0U1RQS6 177 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 IGLV3-25P01717 112 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 Q6ZRM9 215 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 COL2A1P02458 1487 aaPredicted RBP3.57□□□□□ -1.84
PTPN13-202ENST00000411767 LOC101059948A0A1B0GTJ6 334 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 COLCA2A8K830 154 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 CTGFP29279 349 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 RPL28P46779 137 aaKnown RBP3.57□□□□□ -1.84
PTPN13-202ENST00000411767 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.57□□□□□ -1.84
PTPN13-202ENST00000411767 TRAV22A0A0B4J277 110 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 CYSRT1A8MQ03 144 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 HILS1P60008 231 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.57□□□□□ -1.84
PTPN13-202ENST00000411767 TMEM105Q8N8V8 129 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 NUP188Q5SRE5 1749 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 IGKV1D-17A0A075B6S4 117 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 MIR7-3HGQ8N6C7 128 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 CHD4Q14839 1912 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 TRIP11Q15643 1979 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 IGLV3-32A0A0A0MS00 114 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 TMEM213A2RRL7 107 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 LINC01548A6NM66 108 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 ZNF73O43830 326 aaPredicted RBP3.57□□□□□ -1.84
PTPN13-202ENST00000411767 GP9P14770 177 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 WT1P19544 449 aaPredicted RBP3.57□□□□□ -1.84
PTPN13-202ENST00000411767 COL8A2P25067 703 aa3.57□□□□□ -1.84
PTPN13-202ENST00000411767 SCN1AP35498 2009 aa3.56□□□□□ -1.84
PTPN13-202ENST00000411767 IGLV10-54A0A075B6I4 117 aa3.56□□□□□ -1.84
PTPN13-202ENST00000411767 H0Y9P7 68 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms