RNA–Protein interactions for RNA: ENST00000409854.5

EPHA4-202, Transcript of EPH receptor A4, humanhuman

TSL 1 (best) BASIC

Gene EPHA4, Length 3,454 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-202ENST00000409854 RPP21Q9H633 154 aaKnown RBP4.15□□□□□ -1.75
EPHA4-202ENST00000409854 SRD5A3Q9H8P0 318 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 LENEPQ9Y5L5 61 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 A0A1B0GUS0 222 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 J3QR89 54 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 FAM3BP58499 235 aaPredicted RBP4.15□□□□□ -1.75
EPHA4-202ENST00000409854 KRTAP10-3P60369 221 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 FAM19A4Q96LR4 140 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 DUX3Q96PT4 197 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 GFRA4Q9GZZ7 299 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 AGPAT4-IT1Q9H0P7 198 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 SIGLEC8Q9NYZ4 499 aa4.15□□□□□ -1.75
EPHA4-202ENST00000409854 CCL24O00175 119 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 SRSF2Q01130 221 aaKnown RBP4.14□□□□□ -1.75
EPHA4-202ENST00000409854 ERCC8Q13216 396 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 HIST2H2BDQ6DRA6 164 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 Q8TAT8 98 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 TSKUQ8WUA8 353 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 LAMTOR2Q9Y2Q5 125 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 FAM231BA6NCW3 169 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 P01737 135 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 ID1P41134 155 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 ZNF138P52744 262 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 GAGE5Q13069 117 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 GAGE6Q13070 117 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 ASCL2Q99929 193 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 NDFIP1Q9BT67 221 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 IZUMO1RA6ND01 250 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 CYSRT1A8MQ03 144 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 HAX1O00165 279 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 CA1P00915 261 aaPredicted RBP4.14□□□□□ -1.75
EPHA4-202ENST00000409854 FOXA3P55318 350 aaPredicted RBP4.14□□□□□ -1.75
EPHA4-202ENST00000409854 RPL11P62913 178 aaKnown RBP4.14□□□□□ -1.75
EPHA4-202ENST00000409854 PAFAH1B2P68402 229 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 TMEM78Q5T7P6 136 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 NDUFA11Q86Y39 141 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 APRG1Q8IVJ8 170 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 BOD1L2Q8IYS8 172 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 C11orf44Q8N8P7 122 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 MRAPQ8TCY5 172 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 LINC00477Q96M19 166 aa4.14□□□□□ -1.75
EPHA4-202ENST00000409854 FN1P02751 2386 aaKnown RBP4.13□□□□□ -1.75
EPHA4-202ENST00000409854 NF1P21359 2839 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 GAGE12BA1L429 117 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 A8MWL6 223 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 SPINK4O60575 86 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 CT45A10P0DMU9 189 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 ZNF80P51504 273 aaPredicted RBP4.13□□□□□ -1.75
EPHA4-202ENST00000409854 FAM162BQ5T6X4 162 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 GTF2H5Q6ZYL4 71 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 OR8A1Q8NGG7 326 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 MRPL16Q9NX20 251 aaKnown RBP4.13□□□□□ -1.75
EPHA4-202ENST00000409854 NAT8BQ9UHF3 227 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 NOTCH2Q04721 2471 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 A0A1W2PRX2 142 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 SH2D1AO60880 128 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 RPL32P62910 135 aaKnown RBP4.13□□□□□ -1.75
EPHA4-202ENST00000409854 DEFB114Q30KQ6 69 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 ACTL10Q5JWF8 245 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 OR10J6PQ8NGY7 276 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 GTSF1Q8WW33 167 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 FRZBQ92765 325 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 ODF3Q96PU9 254 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 VAMP8Q9BV40 100 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 SELENOKQ9Y6D0 94 aa4.13□□□□□ -1.75
EPHA4-202ENST00000409854 CRISP2P16562 243 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 AZU1P20160 251 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 PRR31Q5SQ13 230 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 RASL11AQ6T310 242 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 ZNF575Q86XF7 245 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 FER1L6-AS1Q8NA97 138 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 NUP35Q8NFH5 326 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 IGKV3-7A0A075B6H7 116 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 A0A1B0GXF2 115 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 A8MTW9 85 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 TRGC2P03986 189 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 SNRPD3P62318 126 aaKnown RBP4.12□□□□□ -1.75
EPHA4-202ENST00000409854 LINC01559Q495D7 138 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 ATP5L2Q7Z4Y8 100 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 TMEM61Q8N0U2 210 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 ZFAND2AQ8N6M9 145 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 SPATA25Q9BR10 227 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 A0A0J9YX75 114 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 HIGD1CA8MV81 97 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 F6UB75 175 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 ZNF705DP0CH99 300 aaPredicted RBP4.12□□□□□ -1.75
EPHA4-202ENST00000409854 ZNF705BP0CI00 300 aaPredicted RBP4.12□□□□□ -1.75
EPHA4-202ENST00000409854 TCL1AP56279 114 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 RIPPLY3P57055 190 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 DEFB1P60022 68 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 HIST1H1AQ02539 215 aaPredicted RBP4.12□□□□□ -1.75
EPHA4-202ENST00000409854 PRR9Q5T870 116 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 GFI1BQ5VTD9 330 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 FA2HQ7L5A8 372 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 NEGR1Q7Z3B1 354 aa4.12□□□□□ -1.75
EPHA4-202ENST00000409854 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.12□□□□□ -1.75
EPHA4-202ENST00000409854 MTORP42345 2549 aa4.11□□□□□ -1.75
EPHA4-202ENST00000409854 TMEM189A5PLL7 270 aa4.11□□□□□ -1.75
EPHA4-202ENST00000409854 FABP5P3A8MUU1 101 aa4.11□□□□□ -1.75
EPHA4-202ENST00000409854 ZNF688P0C7X2 276 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms