RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 TAL2Q16559 108 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 RSPO1Q2MKA7 263 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-204ENST00000395898 LINC01545Q5VT33 79 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 C11orf52Q96A22 123 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 ZC2HC1AQ96GY0 325 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 GTSF1LQ9H1H1 148 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 ZNF503-AS2A6NEH8 195 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 LTAP01374 205 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 UTF1Q5T230 341 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 ADAMTSL5Q6ZMM2 481 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 MAPK1IP1LQ8NDC0 245 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 IGFL2Q6UWQ7 119 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 SH2D6Q7Z4S9 175 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 KNCNA6PVL3 124 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 IGF2BP2-AS1Q96M15 143 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 SIGLEC8Q9NYZ4 499 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 HERV-K104P63124 156 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 SPANXCQ9NY87 97 aa4.32□□□□□ -1.72
VPS13C-204ENST00000395898 DAZ2Q13117 558 aaKnown RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 DAZ4Q86SG3 579 aaKnown RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 DAZ3Q9NR90 486 aaKnown RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 POLR3KQ9Y2Y1 108 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 FAM215AQ9Y5M1 114 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 ARTNQ5T4W7 220 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 CFHR4Q92496 578 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 C9orf66Q5T8R8 295 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 NAA38Q9BRA0 125 aaKnown RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 TPSG1Q9NRR2 321 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 GAGE6Q13070 117 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 KLF5Q13887 457 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 DUX4L9Q6RFH8 374 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 NDUFA12Q9UI09 145 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 H3BQ85 93 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 IGKV1-39P01597 117 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 IGKV1D-39P04432 117 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 CGB3P0DN86 165 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 ZNF726P1Q15940 193 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 BVES-AS1Q5T3Y7 98 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 SLX1AQ9BQ83 275 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 KLF2Q9Y5W3 355 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 SHISA9B4DS77 424 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 A0A1B0GUS0 222 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 TCF15Q12870 199 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 FOXE3Q13461 319 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 NPBQ8NG41 125 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 TRAV26-2A0A0B4J265 109 aa4.31□□□□□ -1.72
VPS13C-204ENST00000395898 WIPF2Q8TF74 440 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 MRPL35Q9NZE8 188 aaKnown RBP4.31□□□□□ -1.72
VPS13C-204ENST00000395898 ARHGAP32A7KAX9 2087 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 TNRC6BQ9UPQ9 1833 aaKnown RBP4.3□□□□□ -1.72
VPS13C-204ENST00000395898 C9JQL5 133 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 DEFB113Q30KQ7 82 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 SCRT2Q9NQ03 307 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 PRR20EP86478 221 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 PRR20CP86479 221 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 PRR20DP86480 221 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 PRR20BP86481 221 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 PRR20AP86496 221 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 Q6ZVH6 145 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 TET2Q6N021 2002 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-204ENST00000395898 MUC6Q6W4X9 2439 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 J3QQQ9 107 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 PPDPFLQ8WWR9 84 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 A0A1W2PPM0 123 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 IGLC7A0M8Q6 106 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 CRLF1O75462 422 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 IGLC2P0DOY2 106 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 IGLC3P0DOY3 106 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 IGHG4P01861 327 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 EGR2P11161 476 aaPredicted RBP4.3□□□□□ -1.72
VPS13C-204ENST00000395898 LYPD6BQ8NI32 183 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 IGFBPL1Q8WX77 278 aa4.3□□□□□ -1.72
VPS13C-204ENST00000395898 NOP10Q9NPE3 64 aaKnown RBP4.3□□□□□ -1.72
VPS13C-204ENST00000395898 CGB7P0DN87 165 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 CITED1Q99966 193 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 CPAMD8Q8IZJ3 1885 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 PRR31Q5SQ13 230 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 TRAV25A0A0B4J276 109 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 CENPVL3A0A0U1RRI6 287 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 C16orf74Q96GX8 76 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 DIAPH2-AS1Q14236 149 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 PRSS33Q8NF86 280 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 DKK4Q9UBT3 224 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 IFITM1P13164 125 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 TECTAO75443 2155 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 IGHV3-38A0A0C4DH36 116 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 DEFB112Q30KQ8 113 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 C9orf153Q5TBE3 101 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 C22orf46C9J442 243 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 DYNAPQ8N1N2 210 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 SLC25A29Q8N8R3 303 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 U3KQE9 123 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 PRSS29PA6NIE9 313 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 PRSS47A8MTI9 375 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 IGLL1P15814 213 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 ZNF524Q96C55 264 aa4.29□□□□□ -1.72
VPS13C-204ENST00000395898 BUB3O43684 328 aa4.28□□□□□ -1.72
VPS13C-204ENST00000395898 Q6ZWC4 215 aa4.28□□□□□ -1.72
VPS13C-204ENST00000395898 FAM208BQ5VWN6 2430 aa4.28□□□□□ -1.72
VPS13C-204ENST00000395898 K7EP13 123 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms