RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 HIVEP3Q5T1R4 2406 aa14.12□□□□□ -0.15
CCDC3-201ENST00000378825 SMPXQ9UHP9 88 aa14.12□□□□□ -0.15
CCDC3-201ENST00000378825 TRBV7-3A0A075B6L6 115 aa14.12□□□□□ -0.15
CCDC3-201ENST00000378825 CD300EQ496F6 205 aaPredicted RBP14.11□□□□□ -0.15
CCDC3-201ENST00000378825 Q8N6K4 173 aa14.11□□□□□ -0.15
CCDC3-201ENST00000378825 RPL39LQ96EH5 51 aaKnown RBP14.11□□□□□ -0.15
CCDC3-201ENST00000378825 PRTN3P24158 256 aa14.11□□□□□ -0.15
CCDC3-201ENST00000378825 CCDC144NLQ6NUI1 221 aa14.11□□□□□ -0.15
CCDC3-201ENST00000378825 ZNF502Q8TBZ5 544 aa14.11□□□□□ -0.15
CCDC3-201ENST00000378825 CCDC140Q96MF4 163 aa14.11□□□□□ -0.15
CCDC3-201ENST00000378825 PRO0461Q9UI25 63 aa14.11□□□□□ -0.15
CCDC3-201ENST00000378825 Q8N9W7 124 aa14.1□□□□□ -0.15
CCDC3-201ENST00000378825 F8W1H4 67 aa14.1□□□□□ -0.15
CCDC3-201ENST00000378825 RRN3P1Q2M238 152 aa14.1□□□□□ -0.15
CCDC3-201ENST00000378825 M0R381 172 aa14.09□□□□□ -0.15
CCDC3-201ENST00000378825 ATP6V0E1O15342 81 aa14.09□□□□□ -0.15
CCDC3-201ENST00000378825 MORN3Q6PF18 240 aaPredicted RBP14.09□□□□□ -0.15
CCDC3-201ENST00000378825 WFDC12Q8WWY7 111 aa14.09□□□□□ -0.15
CCDC3-201ENST00000378825 CIDEAO60543 219 aa14.09□□□□□ -0.15
CCDC3-201ENST00000378825 ZFP36P26651 326 aaKnown RBP14.09□□□□□ -0.15
CCDC3-201ENST00000378825 SRSF1Q07955 248 aaKnown RBP eCLIP14.09□□□□□ -0.15
CCDC3-201ENST00000378825 TMEM78Q5T7P6 136 aa14.09□□□□□ -0.15
CCDC3-201ENST00000378825 C8orf86Q6ZUL3 223 aa14.09□□□□□ -0.15
CCDC3-201ENST00000378825 ITPR1Q14643 2758 aa14.09□□□□□ -0.15
CCDC3-201ENST00000378825 PRSS29PA6NIE9 313 aa14.08□□□□□ -0.15
CCDC3-201ENST00000378825 GAGE13Q4V321 117 aa14.08□□□□□ -0.15
CCDC3-201ENST00000378825 FBXL19-AS1Q494R0 122 aa14.08□□□□□ -0.16
CCDC3-201ENST00000378825 C20orf78Q9BR46 151 aa14.08□□□□□ -0.16
CCDC3-201ENST00000378825 CHTOPQ9Y3Y2 248 aaKnown RBP14.08□□□□□ -0.16
CCDC3-201ENST00000378825 F8VRH5 84 aa14.07□□□□□ -0.16
CCDC3-201ENST00000378825 SMIM2Q9BVW6 85 aa14.07□□□□□ -0.16
CCDC3-201ENST00000378825 EMP1P54849 157 aa14.07□□□□□ -0.16
CCDC3-201ENST00000378825 PLEKHB2Q96CS7 222 aa14.07□□□□□ -0.16
CCDC3-201ENST00000378825 LINC00527Q9UJ94 153 aa14.07□□□□□ -0.16
CCDC3-201ENST00000378825 OR11H12B2RN74 326 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 LGALS1P09382 135 aaKnown RBP14.06□□□□□ -0.16
CCDC3-201ENST00000378825 OR11H1Q8NG94 326 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 OR11H2Q8NH07 326 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 SCGB3A1Q96QR1 104 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 MYMXA0A1B0GTQ4 84 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 A0A1W2PPR1 153 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 PLNP26678 52 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 C14orf178Q8N769 122 aaPredicted RBP14.06□□□□□ -0.16
CCDC3-201ENST00000378825 KLHL30-AS1Q8NEE0 82 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 RASL10AQ92737 203 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 TIMD4Q96H15 378 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 C20orf173Q96LM9 149 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 PGPEP1Q9NXJ5 209 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 A0A1B0GWB2 263 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 H7C1H1 209 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 HLA-DRB4P13762 266 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 KLRB1Q12918 225 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 HLA-DRB4X5D2U9 266 aa14.06□□□□□ -0.16
CCDC3-201ENST00000378825 RBAKDNA6NC62 111 aa14.05□□□□□ -0.16
CCDC3-201ENST00000378825 PSMG4Q5JS54 123 aa14.05□□□□□ -0.16
CCDC3-201ENST00000378825 SMCPP49901 116 aaPredicted RBP14.05□□□□□ -0.16
CCDC3-201ENST00000378825 M0R1W7 72 aa14.04□□□□□ -0.16
CCDC3-201ENST00000378825 PRADC1Q9BSG0 188 aa14.04□□□□□ -0.16
CCDC3-201ENST00000378825 TAL2Q16559 108 aa14.04□□□□□ -0.16
CCDC3-201ENST00000378825 ZFP2Q6ZN57 461 aa14.04□□□□□ -0.16
CCDC3-201ENST00000378825 PTH2Q96A98 100 aa14.04□□□□□ -0.16
CCDC3-201ENST00000378825 SPATA25Q9BR10 227 aa14.04□□□□□ -0.16
CCDC3-201ENST00000378825 SLC50A1Q9BRV3 221 aa14.04□□□□□ -0.16
CCDC3-201ENST00000378825 PRSS47A8MTI9 375 aa14.03□□□□□ -0.16
CCDC3-201ENST00000378825 NEXN-AS1Q8NBZ9 246 aa14.03□□□□□ -0.16
CCDC3-201ENST00000378825 HIF1ANQ9NWT6 349 aa14.03□□□□□ -0.16
CCDC3-201ENST00000378825 LINC01549A6NIU2 74 aa14.02□□□□□ -0.16
CCDC3-201ENST00000378825 RNF223E7ERA6 249 aa14.02□□□□□ -0.16
CCDC3-201ENST00000378825 MGPP08493 103 aa14.02□□□□□ -0.16
CCDC3-201ENST00000378825 SUMO2P61956 95 aaKnown RBP14.02□□□□□ -0.16
CCDC3-201ENST00000378825 LY6DQ14210 128 aa14.02□□□□□ -0.16
CCDC3-201ENST00000378825 FAM110DQ8TAY7 271 aaPredicted RBP14.02□□□□□ -0.16
CCDC3-201ENST00000378825 BAALCQ8WXS3 180 aa14.02□□□□□ -0.16
CCDC3-201ENST00000378825 SCGB2A1O75556 95 aa14.02□□□□□ -0.17
CCDC3-201ENST00000378825 EBI3Q14213 229 aa14.02□□□□□ -0.17
CCDC3-201ENST00000378825 C11orf71Q6IPW1 123 aa14.02□□□□□ -0.17
CCDC3-201ENST00000378825 GLMPQ8WWB7 406 aa14.02□□□□□ -0.17
CCDC3-201ENST00000378825 MRPL16Q9NX20 251 aaKnown RBP14.02□□□□□ -0.17
CCDC3-201ENST00000378825 MUC4Q99102 2169 aa14.02□□□□□ -0.17
CCDC3-201ENST00000378825 NDUFS8O00217 210 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 HOXA3O43365 443 aaPredicted RBP14.01□□□□□ -0.17
CCDC3-201ENST00000378825 SLC25A16P16260 332 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 FHL3Q13643 280 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 NFE4Q86UQ8 179 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 C16orf92Q96LL3 132 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 CLUHP3Q96NS8 147 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 ZNF815PA8K554 130 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 C2orf66Q6UXQ4 117 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 TOMM6Q96B49 74 aa14.01□□□□□ -0.17
CCDC3-201ENST00000378825 IGKV3-7A0A075B6H7 116 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 F6UB75 175 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 APOMO95445 188 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 TGFAP01135 160 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 Q5PR19 223 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 C9orf47Q6ZRZ4 202 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 AJUBAQ96IF1 538 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 IGHV4-4A0A075B6R2 117 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 LOC107984156A0A0G2JMH3 177 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 J3QR89 54 aa14□□□□□ -0.17
CCDC3-201ENST00000378825 SCGB2A2Q13296 93 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms