RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 NSUN5P1Q3KNT7 163 aa10.25□□□□□ -0.77
PTPRF-202ENST00000372405 GATD1Q8NB37 220 aa10.25□□□□□ -0.77
PTPRF-202ENST00000372405 RIGQ13278 110 aa10.25□□□□□ -0.77
PTPRF-202ENST00000372405 ZNF256Q9Y2P7 627 aaPredicted RBP10.25□□□□□ -0.77
PTPRF-202ENST00000372405 TRAV21A0A0B4J279 112 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 IGKV3-20P01619 116 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 Q0VG73 95 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 ZNF124Q15973 351 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 FOXI2Q6ZQN5 318 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 HIST1H2BLQ99880 126 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 CNFNQ9BYD5 112 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 SIGLEC8Q9NYZ4 499 aa10.24□□□□□ -0.77
PTPRF-202ENST00000372405 JMJD1CQ15652 2540 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 DEFB131AP59861 70 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 EBLN2Q6P2I7 272 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 AMTNQ6UX39 209 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 ODF3Q96PU9 254 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 ALKBH7Q9BT30 221 aaPredicted RBP10.23□□□□□ -0.77
PTPRF-202ENST00000372405 MSRB1Q9NZV6 116 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 A0A1B0GW15 77 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 KNCNA6PVL3 124 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 AMBPP02760 352 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 FABP4P15090 132 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 ZNF493Q6ZR52 646 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 NAGKQ9UJ70 344 aa10.23□□□□□ -0.77
PTPRF-202ENST00000372405 LOC102724200A0A096LPH7 203 aaPredicted RBP10.22□□□□□ -0.77
PTPRF-202ENST00000372405 M0R2Z0 102 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 SERF1AO75920 110 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 NTF3P20783 257 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 ANXA2RQ3ZCQ2 193 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 C18orf32Q8TCD1 76 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 BORCS7Q96B45 105 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 RCHY1Q96PM5 261 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 MAP6D1Q9H9H5 199 aa10.22□□□□□ -0.77
PTPRF-202ENST00000372405 IQCJQ1A5X6 159 aa10.21□□□□□ -0.77
PTPRF-202ENST00000372405 NDUFA11Q86Y39 141 aa10.21□□□□□ -0.77
PTPRF-202ENST00000372405 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.21□□□□□ -0.77
PTPRF-202ENST00000372405 SPAG8Q99932 426 aaPredicted RBP10.21□□□□□ -0.77
PTPRF-202ENST00000372405 VWFP04275 2813 aa10.21□□□□□ -0.77
PTPRF-202ENST00000372405 TRAV12-2A0A075B6T6 113 aa10.21□□□□□ -0.78
PTPRF-202ENST00000372405 A8MTW9 85 aa10.21□□□□□ -0.78
PTPRF-202ENST00000372405 ZNF324O75467 553 aaPredicted RBP10.21□□□□□ -0.78
PTPRF-202ENST00000372405 S100A2P29034 98 aa10.21□□□□□ -0.78
PTPRF-202ENST00000372405 OR10J3Q5JRS4 329 aa10.21□□□□□ -0.78
PTPRF-202ENST00000372405 OR10AG1Q8NH19 301 aa10.21□□□□□ -0.78
PTPRF-202ENST00000372405 TRAV25A0A0B4J276 109 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 RBMY1BA6NDE4 496 aaKnown RBP10.2□□□□□ -0.78
PTPRF-202ENST00000372405 RBMY1EA6NEQ0 496 aaKnown RBP10.2□□□□□ -0.78
PTPRF-202ENST00000372405 SNAI2O43623 268 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 DUSP14O95147 198 aaKnown RBP10.2□□□□□ -0.78
PTPRF-202ENST00000372405 OR5AL1P0C617 328 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 RBMY1DP0C7P1 496 aaKnown RBP10.2□□□□□ -0.78
PTPRF-202ENST00000372405 HLA-DRB4P13762 266 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 LEPP41159 167 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 CTAG1AP78358 180 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 TWIST1Q15672 202 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 SPINK13Q1W4C9 94 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 BAGE3Q86Y29 109 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 OR10D4PQ8NGN7 298 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 HLA-DRB4X5D2U9 266 aa10.2□□□□□ -0.78
PTPRF-202ENST00000372405 TEP1Q99973 2627 aaKnown RBP10.2□□□□□ -0.78
PTPRF-202ENST00000372405 ATRQ13535 2644 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 TRAV12-3A0A0B4J271 114 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 C7orf71A4D174 169 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 OR4C46A6NHA9 309 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 H3BMM0 161 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 H3BVH4 76 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 GNRH2O43555 120 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 ESDP10768 282 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 ODF3L2Q3SX64 289 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 AMN1Q8IY45 258 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 SPRY2O43597 315 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 SAP30O75446 220 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 CDKN1BP46527 198 aa10.19□□□□□ -0.78
PTPRF-202ENST00000372405 MUC4Q99102 2169 aa10.18□□□□□ -0.78
PTPRF-202ENST00000372405 FAM104BQ5XKR9 115 aa10.18□□□□□ -0.78
PTPRF-202ENST00000372405 PACRGQ96M98 296 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-202ENST00000372405 CRXO43186 299 aaPredicted RBP10.17□□□□□ -0.78
PTPRF-202ENST00000372405 IGLV1-51P01701 117 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 RNASE3P12724 160 aaKnown RBP10.17□□□□□ -0.78
PTPRF-202ENST00000372405 FXYD7P58549 80 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 URB1-AS1Q96HZ7 61 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 NIT2Q9NQR4 276 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 IGHV4-4A0A075B6R2 117 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 RBMY1A1P0DJD3 496 aaKnown RBP10.17□□□□□ -0.78
PTPRF-202ENST00000372405 RBMY1CP0DJD4 496 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 RBMY1FQ15415 496 aaKnown RBP10.17□□□□□ -0.78
PTPRF-202ENST00000372405 DNLZQ5SXM8 178 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 DMRTA1Q5VZB9 504 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 LINC00482Q8N8I6 264 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 RNF185Q96GF1 192 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 TMEM191AQ9H0A3 160 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 SCRT2Q9NQ03 307 aa10.17□□□□□ -0.78
PTPRF-202ENST00000372405 TSPOP30536 169 aa10.16□□□□□ -0.78
PTPRF-202ENST00000372405 ASIPP42127 132 aa10.16□□□□□ -0.78
PTPRF-202ENST00000372405 MRPL51Q4U2R6 128 aaKnown RBP10.16□□□□□ -0.78
PTPRF-202ENST00000372405 PYY3Q5JQD4 70 aa10.16□□□□□ -0.78
PTPRF-202ENST00000372405 GSN-AS1Q9NRJ2 163 aa10.16□□□□□ -0.78
PTPRF-202ENST00000372405 TIMM8BQ9Y5J9 83 aaPredicted RBP10.16□□□□□ -0.78
PTPRF-202ENST00000372405 U3KQK5 164 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms