RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 IGKV3-20P01619 116 aa16.79■□□□□ 0.28
PDLIM2-203ENST00000339162 CTRLP40313 264 aa16.79■□□□□ 0.28
PDLIM2-203ENST00000339162 TWIST1Q15672 202 aa16.79■□□□□ 0.28
PDLIM2-203ENST00000339162 FAM19A4Q96LR4 140 aa16.79■□□□□ 0.28
PDLIM2-203ENST00000339162 PEMTQ9UBM1 199 aa16.79■□□□□ 0.28
PDLIM2-203ENST00000339162 SAMD13Q5VXD3 122 aa16.78■□□□□ 0.28
PDLIM2-203ENST00000339162 PRO1933Q9H354 126 aa16.78■□□□□ 0.28
PDLIM2-203ENST00000339162 CSN3P07498 182 aa16.77■□□□□ 0.27
PDLIM2-203ENST00000339162 FLNBO75369 2602 aaKnown RBP16.77■□□□□ 0.27
PDLIM2-203ENST00000339162 A0A1B0GW15 77 aa16.76■□□□□ 0.27
PDLIM2-203ENST00000339162 ESDP10768 282 aa16.76■□□□□ 0.27
PDLIM2-203ENST00000339162 SAMD10Q9BYL1 202 aa16.76■□□□□ 0.27
PDLIM2-203ENST00000339162 AGRNO00468 2067 aa16.76■□□□□ 0.27
PDLIM2-203ENST00000339162 NSD1Q96L73 2696 aaPredicted RBP16.76■□□□□ 0.27
PDLIM2-203ENST00000339162 AMN1Q8IY45 258 aa16.76■□□□□ 0.27
PDLIM2-203ENST00000339162 TMEM61Q8N0U2 210 aa16.76■□□□□ 0.27
PDLIM2-203ENST00000339162 CCL24O00175 119 aa16.75■□□□□ 0.27
PDLIM2-203ENST00000339162 PAFAH1B2P68402 229 aa16.75■□□□□ 0.27
PDLIM2-203ENST00000339162 RNF114Q9Y508 228 aa16.75■□□□□ 0.27
PDLIM2-203ENST00000339162 TIMM8BQ9Y5J9 83 aaPredicted RBP16.75■□□□□ 0.27
PDLIM2-203ENST00000339162 NIPBLQ6KC79 2804 aaeCLIP16.75■□□□□ 0.27
PDLIM2-203ENST00000339162 TRAV21A0A0B4J279 112 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 PMCHP20382 165 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 ZNF493Q6ZR52 646 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 FAM19A2Q8N3H0 131 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 GATD1Q8NB37 220 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 KCNS1Q96KK3 526 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 A0A0J9YX75 114 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 ZNF664Q8N3J9 261 aa16.74■□□□□ 0.27
PDLIM2-203ENST00000339162 SPRY2O43597 315 aa16.73■□□□□ 0.27
PDLIM2-203ENST00000339162 OR10AG1Q8NH19 301 aa16.73■□□□□ 0.27
PDLIM2-203ENST00000339162 DYNLRB2Q8TF09 96 aa16.73■□□□□ 0.27
PDLIM2-203ENST00000339162 TSSC4Q9Y5U2 329 aaPredicted RBP16.73■□□□□ 0.27
PDLIM2-203ENST00000339162 H3BVH4 76 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 ANXA2RQ3ZCQ2 193 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 RNASEKQ6P5S7 137 aaKnown RBP16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 FN1P02751 2386 aaKnown RBP16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 AMTP48728 403 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 FHL3Q13643 280 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 EBLN2Q6P2I7 272 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 APRG1Q8IVJ8 170 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 URB1-AS1Q96HZ7 61 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 CNFNQ9BYD5 112 aa16.72■□□□□ 0.27
PDLIM2-203ENST00000339162 M0R2Z0 102 aa16.71■□□□□ 0.27
PDLIM2-203ENST00000339162 ZNF124Q15973 351 aa16.71■□□□□ 0.27
PDLIM2-203ENST00000339162 FAM104BQ5XKR9 115 aa16.71■□□□□ 0.27
PDLIM2-203ENST00000339162 NIT1Q86X76 327 aa16.71■□□□□ 0.27
PDLIM2-203ENST00000339162 TRAV12-2A0A075B6T6 113 aa16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 KLLNB2CW77 178 aa16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 DEFB114Q30KQ6 69 aa16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 CD300EQ496F6 205 aaPredicted RBP16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 LBHQ53QV2 105 aaPredicted RBP16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 Q6ZWC4 215 aa16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 JMJD8Q96S16 334 aa16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 GNRH2O43555 120 aa16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 DEFB131AP59861 70 aa16.7■□□□□ 0.26
PDLIM2-203ENST00000339162 TRAV12-3A0A0B4J271 114 aa16.69■□□□□ 0.26
PDLIM2-203ENST00000339162 TRBV7-9A0A0J9YWB2 115 aa16.69■□□□□ 0.26
PDLIM2-203ENST00000339162 D6R8Y8 96 aa16.69■□□□□ 0.26
PDLIM2-203ENST00000339162 ZNF324O75467 553 aaPredicted RBP16.69■□□□□ 0.26
PDLIM2-203ENST00000339162 PROK1P58294 105 aa16.69■□□□□ 0.26
PDLIM2-203ENST00000339162 KNCNA6PVL3 124 aa16.69■□□□□ 0.26
PDLIM2-203ENST00000339162 MRPL51Q4U2R6 128 aaKnown RBP16.69■□□□□ 0.26
PDLIM2-203ENST00000339162 SMKR1H3BMG3 65 aa16.68■□□□□ 0.26
PDLIM2-203ENST00000339162 NDUFA7O95182 113 aa16.68■□□□□ 0.26
PDLIM2-203ENST00000339162 SPINK13Q1W4C9 94 aa16.68■□□□□ 0.26
PDLIM2-203ENST00000339162 NDUFAF3Q9BU61 184 aa16.68■□□□□ 0.26
PDLIM2-203ENST00000339162 HSBP1O75506 76 aa16.68■□□□□ 0.26
PDLIM2-203ENST00000339162 NSUN5P1Q3KNT7 163 aa16.68■□□□□ 0.26
PDLIM2-203ENST00000339162 PMCHL1Q16048 86 aa16.67■□□□□ 0.26
PDLIM2-203ENST00000339162 TMEM191AQ9H0A3 160 aa16.67■□□□□ 0.26
PDLIM2-203ENST00000339162 S100A4P26447 101 aaKnown RBP16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 SPANXN1Q5VSR9 72 aa16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 FOXI2Q6ZQN5 318 aa16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 C2orf88Q9BSF0 95 aa16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 A0A1B0GV90 55 aa16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 NCR2O95944 276 aa16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 OR5AL1P0C617 328 aa16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 EVI2AP22794 236 aa16.66■□□□□ 0.26
PDLIM2-203ENST00000339162 FXYD7P58549 80 aa16.65■□□□□ 0.26
PDLIM2-203ENST00000339162 C2CD3Q4AC94 2353 aa16.65■□□□□ 0.26
PDLIM2-203ENST00000339162 SNAI2O43623 268 aa16.65■□□□□ 0.26
PDLIM2-203ENST00000339162 TCF21O43680 179 aa16.65■□□□□ 0.26
PDLIM2-203ENST00000339162 GAS8-AS1O95177 125 aa16.65■□□□□ 0.26
PDLIM2-203ENST00000339162 KRTAP10-3P60369 221 aa16.65■□□□□ 0.26
PDLIM2-203ENST00000339162 RNF185Q96GF1 192 aa16.65■□□□□ 0.26
PDLIM2-203ENST00000339162 C7orf71A4D174 169 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 ADARB2-AS1A8MUL3 147 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 SCGB1D1O95968 90 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 LEPP41159 167 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 ASIPP42127 132 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 M0R381 172 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 RAB4AP20338 218 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 ORMDL3Q8N138 153 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 PRELID3AQ96N28 172 aa16.64■□□□□ 0.25
PDLIM2-203ENST00000339162 LOC389332A0A1B0GUA5 103 aa16.63■□□□□ 0.25
PDLIM2-203ENST00000339162 LINC00614P0C842 121 aa16.63■□□□□ 0.25
PDLIM2-203ENST00000339162 CKS2P33552 79 aa16.63■□□□□ 0.25
PDLIM2-203ENST00000339162 CDKN1BP46527 198 aa16.63■□□□□ 0.25
PDLIM2-203ENST00000339162 FAM159AQ6UWV7 190 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms