RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 ZFP36L1Q07352 338 aaKnown RBP9.08□□□□□ -0.96
PTPN4-201ENST00000263708 DEFB136Q30KP8 78 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 EIF4EBP2Q13542 120 aaPredicted RBP9.08□□□□□ -0.96
PTPN4-201ENST00000263708 MESP1Q9BRJ9 268 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 A0A0G2JMZ2 1700 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 LRRC37A2A6NM11 1700 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 A0A1B0GW64 132 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 NCOA6Q14686 2063 aaPredicted RBP9.08□□□□□ -0.96
PTPN4-201ENST00000263708 IGLV3-12A0A075B6K2 115 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 COLCA2A8K830 154 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 IGLC2P0DOY2 106 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 IGLC3P0DOY3 106 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 MRPL35Q9NZE8 188 aaKnown RBP9.08□□□□□ -0.96
PTPN4-201ENST00000263708 A0A1W2PPM0 123 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 PSMB8P28062 276 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 Q6P435 159 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 TMEM14BQ9NUH8 114 aa9.08□□□□□ -0.96
PTPN4-201ENST00000263708 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.08□□□□□ -0.96
PTPN4-201ENST00000263708 ANAPC1Q9H1A4 1944 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 COX7A2LO14548 114 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 WDR86Q86TI4 376 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 ZNF664Q8N3J9 261 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 FGF16O43320 207 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 HIST2H2BCQ6DN03 193 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 CFPP27918 469 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 ASPHD1Q5U4P2 390 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 K7EP34 96 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 SRSF2Q01130 221 aaKnown RBP9.07□□□□□ -0.96
PTPN4-201ENST00000263708 C9orf66Q5T8R8 295 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 ESM1Q9NQ30 184 aa9.07□□□□□ -0.96
PTPN4-201ENST00000263708 POU2AF1Q16633 256 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 ZNF362Q5T0B9 420 aaPredicted RBP9.06□□□□□ -0.96
PTPN4-201ENST00000263708 J3QLI3 93 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 LTAP01374 205 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 PIFOQ8TCI5 191 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 WIPF3A6NGB9 483 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 SIGLEC8Q9NYZ4 499 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 PLXNB1O43157 2135 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 IGHV7-4-1A0A0J9YVY3 117 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 TNS1Q9HBL0 1735 aaKnown RBP9.06□□□□□ -0.96
PTPN4-201ENST00000263708 APRG1Q8IVJ8 170 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 K7EP13 123 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 IGLV3-19P01714 112 aa9.06□□□□□ -0.96
PTPN4-201ENST00000263708 NPBQ8NG41 125 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 KLK5Q9Y337 293 aaPredicted RBP9.05□□□□□ -0.96
PTPN4-201ENST00000263708 BRK1Q8WUW1 75 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 POLR3KQ9Y2Y1 108 aaPredicted RBP9.05□□□□□ -0.96
PTPN4-201ENST00000263708 TRBV19A0A075B6N1 114 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 FNDC10F2Z333 226 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 F8VRH5 84 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 HIGD2BQ4VC39 106 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 GFI1Q99684 422 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 RNF138Q8WVD3 245 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 C18orf32Q8TCD1 76 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 CYYR1Q96J86 154 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 ADAMTS9Q9P2N4 1935 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 YPEL3P61236 119 aaPredicted RBP9.05□□□□□ -0.96
PTPN4-201ENST00000263708 ZNF492Q9P255 531 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 GPHB5Q86YW7 130 aa9.05□□□□□ -0.96
PTPN4-201ENST00000263708 NLRC5Q86WI3 1866 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 GNRH2O43555 120 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 ARTNQ5T4W7 220 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 GTSF1Q8WW33 167 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 FAM120AOSQ5T036 256 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 AMTNQ6UX39 209 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 B9D2Q9BPU9 175 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 NDUFS6O75380 124 aaKnown RBP9.04□□□□□ -0.96
PTPN4-201ENST00000263708 NTN5Q8WTR8 489 aaPredicted RBP9.04□□□□□ -0.96
PTPN4-201ENST00000263708 MRPL23Q16540 153 aaKnown RBP9.04□□□□□ -0.96
PTPN4-201ENST00000263708 FOXI2Q6ZQN5 318 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 REG4Q9BYZ8 158 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 ZFP2Q6ZN57 461 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 HERV-K104P63124 156 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 SPART-AS1P0CW21 52 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 COX8AP10176 69 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 GP9P14770 177 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 ZC2HC1AQ96GY0 325 aa9.04□□□□□ -0.96
PTPN4-201ENST00000263708 MED13LQ71F56 2210 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 COL4A5P29400 1685 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 TMEM131Q92545 1883 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 B5MCH6 92 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 K7EQD1 137 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 OPRPNQ99935 248 aaPredicted RBP9.03□□□□□ -0.96
PTPN4-201ENST00000263708 SPANXCQ9NY87 97 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 C16orf74Q96GX8 76 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 PRR25Q96S07 402 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 ZNF581Q9P0T4 197 aa9.03□□□□□ -0.96
PTPN4-201ENST00000263708 C5orf63A6NC05 138 aa9.02□□□□□ -0.96
PTPN4-201ENST00000263708 MST1P26927 711 aa9.02□□□□□ -0.96
PTPN4-201ENST00000263708 ZNF493Q6ZR52 646 aa9.02□□□□□ -0.97
PTPN4-201ENST00000263708 DEFB125Q8N687 156 aa9.02□□□□□ -0.97
PTPN4-201ENST00000263708 CYTL1Q9NRR1 136 aa9.02□□□□□ -0.97
PTPN4-201ENST00000263708 NDUFA4L2Q9NRX3 87 aa9.02□□□□□ -0.97
PTPN4-201ENST00000263708 SND1-IT1Q9HBX3 110 aa9.02□□□□□ -0.97
PTPN4-201ENST00000263708 PYY3Q5JQD4 70 aa9.02□□□□□ -0.97
PTPN4-201ENST00000263708 PLXNB3Q9ULL4 1909 aa9.02□□□□□ -0.97
PTPN4-201ENST00000263708 SLURP1P55000 103 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 C17orf77Q96MU5 243 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 H3BRN7 92 aa9.01□□□□□ -0.97
PTPN4-201ENST00000263708 TMEM61Q8N0U2 210 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms