RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRR31Q5SQ13 230 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 SEM1Q6ZVN7 128 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 TM2D2Q9BX73 214 aa11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 EIF4EBP2Q13542 120 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-201ENST00000263630 NPSP0C0P6 89 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 TMEM14BQ9NUH8 114 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 MSMBP08118 114 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 CFHR1Q03591 330 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 CXCL5P42830 114 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 KIR2DL5BQ8NHK3 375 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 SND1-IT1Q9HBX3 110 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 TFF1P04155 84 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 CYTL1Q9NRR1 136 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 CACNA1HO95180 2353 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 TRBV19A0A075B6N1 114 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 FAM231DQ6ZW35 169 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 CD177Q8N6Q3 437 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 GAFA1Q96PS6 74 aa11.16□□□□□ -0.62
CCDC88A-201ENST00000263630 J3QLI3 93 aa11.15□□□□□ -0.62
CCDC88A-201ENST00000263630 C3orf22Q8N5N4 141 aa11.15□□□□□ -0.62
CCDC88A-201ENST00000263630 HIST2H2BCQ6DN03 193 aa11.15□□□□□ -0.62
CCDC88A-201ENST00000263630 Q6ZS49 121 aa11.15□□□□□ -0.62
CCDC88A-201ENST00000263630 PAQR4Q8N4S7 273 aaPredicted RBP11.15□□□□□ -0.62
CCDC88A-201ENST00000263630 PRR25Q96S07 402 aa11.15□□□□□ -0.62
CCDC88A-201ENST00000263630 AGRNO00468 2067 aa11.15□□□□□ -0.63
CCDC88A-201ENST00000263630 B9D2Q9BPU9 175 aa11.15□□□□□ -0.63
CCDC88A-201ENST00000263630 CR1LQ2VPA4 569 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 TMEM61Q8N0U2 210 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 PCDH15Q96QU1 1955 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 FOXI2Q6ZQN5 318 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 SPACA3Q8IXA5 215 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 ATP5EP56381 51 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 LINC00479Q96M42 142 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 SORL1Q92673 2214 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 IGLV3-12A0A075B6K2 115 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 ATP6V0E1O15342 81 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 FGFBP3Q8TAT2 258 aa11.14□□□□□ -0.63
CCDC88A-201ENST00000263630 LINC00473A8K010 186 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 A0A096LPF7 62 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 IGLL1P15814 213 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 MRPL23Q16540 153 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 LY6DQ14210 128 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 NOP10Q9NPE3 64 aaKnown RBP11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 DUX4L9Q6RFH8 374 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 VWA8A3KMH1 1905 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 HOXB4P17483 251 aaPredicted RBP11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 CRYGSP22914 178 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 TEN1Q86WV5 123 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 NDUFS7O75251 213 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 IGLC7A0M8Q6 106 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 NDUFC2-KCTD14E9PQ53 114 aa11.13□□□□□ -0.63
CCDC88A-201ENST00000263630 AMTNQ6UX39 209 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 NRXN2Q9P2S2 1712 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 TICRRQ7Z2Z1 1910 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 J3QRE1 110 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 IGKV1D-8A0A087WSZ0 117 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 CRYGBP07316 175 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 IGHV1-69DA0A0B4J2H0 117 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 CSRP1P21291 193 aaKnown RBP11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 GFI1Q99684 422 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 BPESC1Q9GZL8 116 aa11.12□□□□□ -0.63
CCDC88A-201ENST00000263630 DIRC1Q969H9 104 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 NDUFA1O15239 70 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 RNASE13Q5GAN3 156 aaKnown RBP11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 C16orf74Q96GX8 76 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 PRDM6Q9NQX0 595 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 C11orf52Q96A22 123 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 REG4Q9BYZ8 158 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 WFDC11Q8NEX6 87 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 UPK3BQ9BT76 320 aa11.11□□□□□ -0.63
CCDC88A-201ENST00000263630 RBAKDNA6NC62 111 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 NDUFA4L2Q9NRX3 87 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 SERP1Q9Y6X1 66 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 IGHV1-69P01742 117 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 IGKV1-16P04430 117 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 Q6ZQT7 251 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 FANCD2OSQ96PS1 177 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 MALRD1Q5VYJ5 2156 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 Q6P435 159 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 ADAMTS7Q9UKP4 1686 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 TRBV10-2A0A0K0K1G8 114 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 H3BRN7 92 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 MPLKIPQ8TAP9 179 aa11.1□□□□□ -0.63
CCDC88A-201ENST00000263630 VOPP1Q96AW1 172 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 A0A0G2JMZ2 1700 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 LRRC37A2A6NM11 1700 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 LRRC37AA6NMS7 1700 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 A0A0G2JNJ9 132 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 Q9UFV3 132 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 LENEPQ9Y5L5 61 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 TEX36Q5VZQ5 186 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 FAM110AQ9BQ89 295 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 H3BUA1 57 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 V9GYV3 84 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 IGKV1-12A0A0C4DH73 117 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 IGHV7-4-1A0A0J9YVY3 117 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 A0A1B0GUS0 222 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 IGKV1D-12P01611 117 aa11.09□□□□□ -0.63
CCDC88A-201ENST00000263630 LGALS9O00182 355 aa11.08□□□□□ -0.64
CCDC88A-201ENST00000263630 NHSL1Q5SYE7 1610 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 343.5 ms