RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TRAV25A0A0B4J276 109 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 ODF3L2Q3SX64 289 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 ACTL10Q5JWF8 245 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 C3orf56Q8N813 242 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 FAM19A4Q96LR4 140 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 SAV1Q9H4B6 383 aaPredicted RBP14.93□□□□□ -0.02
CLN3-250ENST00000636839 IL36BQ9NZH7 164 aa14.93□□□□□ -0.02
CLN3-250ENST00000636839 A0A1W2PPQ1 181 aa14.92□□□□□ -0.02
CLN3-250ENST00000636839 OR4C46A6NHA9 309 aa14.92□□□□□ -0.02
CLN3-250ENST00000636839 RPP21Q9H633 154 aaKnown RBP14.92□□□□□ -0.02
CLN3-250ENST00000636839 PPP1R14DQ9NXH3 145 aa14.92□□□□□ -0.02
CLN3-250ENST00000636839 TMSB15BA0A087X1C1 80 aa14.92□□□□□ -0.02
CLN3-250ENST00000636839 FAM162BQ5T6X4 162 aa14.92□□□□□ -0.02
CLN3-250ENST00000636839 SPINK4O60575 86 aa14.91□□□□□ -0.02
CLN3-250ENST00000636839 FRMD6-AS1P0C7T7 363 aa14.91□□□□□ -0.02
CLN3-250ENST00000636839 EBLN2Q6P2I7 272 aa14.91□□□□□ -0.02
CLN3-250ENST00000636839 ZNF575Q86XF7 245 aa14.91□□□□□ -0.02
CLN3-250ENST00000636839 OR2D3Q8NGH3 330 aa14.91□□□□□ -0.02
CLN3-250ENST00000636839 BIN3Q9NQY0 253 aa14.91□□□□□ -0.02
CLN3-250ENST00000636839 C11orf21Q9P2W6 132 aa14.9□□□□□ -0.02
CLN3-250ENST00000636839 CD7P09564 240 aa14.9□□□□□ -0.02
CLN3-250ENST00000636839 FOXI2Q6ZQN5 318 aa14.9□□□□□ -0.02
CLN3-250ENST00000636839 S100PP25815 95 aa14.89□□□□□ -0.03
CLN3-250ENST00000636839 RNASE4P34096 147 aaKnown RBP14.89□□□□□ -0.03
CLN3-250ENST00000636839 C12orf54Q6X4T0 127 aa14.89□□□□□ -0.03
CLN3-250ENST00000636839 GTSF1Q8WW33 167 aa14.89□□□□□ -0.03
CLN3-250ENST00000636839 WFDC10AQ9H1F0 79 aa14.89□□□□□ -0.03
CLN3-250ENST00000636839 SMIM27A0A1W2PRY6 76 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 M0R2Z0 102 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 FXYD7P58549 80 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 NEU1Q99519 415 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 RBMY1BA6NDE4 496 aaKnown RBP14.88□□□□□ -0.03
CLN3-250ENST00000636839 RBMY1EA6NEQ0 496 aaKnown RBP14.88□□□□□ -0.03
CLN3-250ENST00000636839 RBMY1DP0C7P1 496 aaKnown RBP14.88□□□□□ -0.03
CLN3-250ENST00000636839 RAB5AP20339 215 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 TMEM158Q8WZ71 300 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 FAM210BQ96KR6 192 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 IMMP2LQ96T52 175 aa14.88□□□□□ -0.03
CLN3-250ENST00000636839 TRAV12-2A0A075B6T6 113 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 FABP5P3A8MUU1 101 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 H3BMM0 161 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 GPX1P07203 203 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 KCNIP4Q6PIL6 250 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 AMTNQ6UX39 209 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 TSKUQ8WUA8 353 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 PYGO2Q9BRQ0 406 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 LENEPQ9Y5L5 61 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 ORM1P02763 201 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 SPINK13Q1W4C9 94 aa14.87□□□□□ -0.03
CLN3-250ENST00000636839 TRBV24-1A0A075B6N3 115 aa14.86□□□□□ -0.03
CLN3-250ENST00000636839 HLA-DRB4P13762 266 aa14.86□□□□□ -0.03
CLN3-250ENST00000636839 IGLL1P15814 213 aa14.86□□□□□ -0.03
CLN3-250ENST00000636839 CRISP2P16562 243 aa14.86□□□□□ -0.03
CLN3-250ENST00000636839 BEAN1Q3B7T3 259 aa14.86□□□□□ -0.03
CLN3-250ENST00000636839 NUP35Q8NFH5 326 aa14.86□□□□□ -0.03
CLN3-250ENST00000636839 HLA-DRB4X5D2U9 266 aa14.86□□□□□ -0.03
CLN3-250ENST00000636839 IGKV3D-20A0A0C4DH25 116 aa14.85□□□□□ -0.03
CLN3-250ENST00000636839 TMEM189A5PLL7 270 aa14.85□□□□□ -0.03
CLN3-250ENST00000636839 HIGD1CA8MV81 97 aa14.85□□□□□ -0.03
CLN3-250ENST00000636839 GRIFINA4D1Z8 144 aa14.85□□□□□ -0.03
CLN3-250ENST00000636839 KLLNB2CW77 178 aa14.85□□□□□ -0.03
CLN3-250ENST00000636839 C19orf73Q9NVV2 129 aa14.85□□□□□ -0.03
CLN3-250ENST00000636839 A8MWL6 223 aa14.84□□□□□ -0.03
CLN3-250ENST00000636839 OR11H12B2RN74 326 aa14.84□□□□□ -0.03
CLN3-250ENST00000636839 RPS10P46783 165 aaKnown RBP14.84□□□□□ -0.03
CLN3-250ENST00000636839 PRR31Q5SQ13 230 aa14.84□□□□□ -0.03
CLN3-250ENST00000636839 SHISA2Q6UWI4 295 aa14.84□□□□□ -0.03
CLN3-250ENST00000636839 WFDC9Q8NEX5 89 aa14.84□□□□□ -0.03
CLN3-250ENST00000636839 PGLYRP4Q96LB8 373 aa14.84□□□□□ -0.03
CLN3-250ENST00000636839 DUSP14O95147 198 aaKnown RBP14.83□□□□□ -0.03
CLN3-250ENST00000636839 CT83Q5H943 113 aa14.83□□□□□ -0.03
CLN3-250ENST00000636839 OR2K2Q8NGT1 345 aa14.83□□□□□ -0.03
CLN3-250ENST00000636839 NAGKQ9UJ70 344 aa14.83□□□□□ -0.03
CLN3-250ENST00000636839 TRAV12-3A0A0B4J271 114 aa14.83□□□□□ -0.04
CLN3-250ENST00000636839 MUC21Q5SSG8 566 aa14.83□□□□□ -0.04
CLN3-250ENST00000636839 C9orf66Q5T8R8 295 aa14.83□□□□□ -0.04
CLN3-250ENST00000636839 MRPL54Q6P161 138 aaKnown RBP14.83□□□□□ -0.04
CLN3-250ENST00000636839 TPPP3Q9BW30 176 aa14.83□□□□□ -0.04
CLN3-250ENST00000636839 MUC21A0A0G2JKD1 596 aa14.82□□□□□ -0.04
CLN3-250ENST00000636839 MUC21A0A140T8X8 626 aa14.82□□□□□ -0.04
CLN3-250ENST00000636839 SSTP61278 116 aa14.82□□□□□ -0.04
CLN3-250ENST00000636839 GFI1BQ5VTD9 330 aa14.82□□□□□ -0.04
CLN3-250ENST00000636839 NAT8BQ9UHF3 227 aa14.82□□□□□ -0.04
CLN3-250ENST00000636839 PKD1L1Q8TDX9 2849 aa14.81□□□□□ -0.04
CLN3-250ENST00000636839 TRBV7-9A0A0J9YWB2 115 aa14.81□□□□□ -0.04
CLN3-250ENST00000636839 LINC01559Q495D7 138 aa14.81□□□□□ -0.04
CLN3-250ENST00000636839 BTF3L4Q96K17 158 aa14.81□□□□□ -0.04
CLN3-250ENST00000636839 CDKN1BP46527 198 aa14.8□□□□□ -0.04
CLN3-250ENST00000636839 ODF3Q96PU9 254 aa14.8□□□□□ -0.04
CLN3-250ENST00000636839 MDFIQ99750 246 aa14.8□□□□□ -0.04
CLN3-250ENST00000636839 A8MTW9 85 aa14.8□□□□□ -0.04
CLN3-250ENST00000636839 LEPP41159 167 aa14.8□□□□□ -0.04
CLN3-250ENST00000636839 INSL3P51460 131 aa14.8□□□□□ -0.04
CLN3-250ENST00000636839 Q6AWC8 147 aa14.8□□□□□ -0.04
CLN3-250ENST00000636839 TRAV21A0A0B4J279 112 aa14.79□□□□□ -0.04
CLN3-250ENST00000636839 CRXO43186 299 aaPredicted RBP14.79□□□□□ -0.04
CLN3-250ENST00000636839 ZNF324O75467 553 aaPredicted RBP14.79□□□□□ -0.04
CLN3-250ENST00000636839 RBMY1A1P0DJD3 496 aaKnown RBP14.79□□□□□ -0.04
CLN3-250ENST00000636839 RBMY1CP0DJD4 496 aa14.79□□□□□ -0.04
CLN3-250ENST00000636839 RBMY1FQ15415 496 aaKnown RBP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms