RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 OR11H2Q8NH07 326 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 ZNF479Q96JC4 524 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 FLNBO75369 2602 aaKnown RBP6.81□□□□□ -1.32
VCL-207ENST00000624354 MALRD1Q5VYJ5 2156 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 IGLL5B9A064 214 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 NBR2O15453 112 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 SH2D1AO60880 128 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 HBDP02042 147 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 INSL3P51460 131 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 TMEM95Q3KNT9 176 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 ZNF502Q8TBZ5 544 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 PHLDA1Q8WV24 401 aaPredicted RBP6.81□□□□□ -1.32
VCL-207ENST00000624354 CHAC1Q9BUX1 264 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 HIGD1BQ9P298 99 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 ONECUT1Q9UBC0 465 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 SS18L2Q9UHA2 77 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 S4R3C0 116 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 U3KQK5 164 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 LY6LH3BQJ8 138 aa6.81□□□□□ -1.32
VCL-207ENST00000624354 KLF17Q5JT82 389 aaPredicted RBP6.81□□□□□ -1.32
VCL-207ENST00000624354 A0A1B0GWB2 263 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 CKS2P33552 79 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 MFAP4P55083 255 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 MRPL51Q4U2R6 128 aaKnown RBP6.8□□□□□ -1.32
VCL-207ENST00000624354 IFI27L1Q96BM0 104 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 C20orf78Q9BR46 151 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 HELZ2Q9BYK8 2649 aaKnown RBP6.8□□□□□ -1.32
VCL-207ENST00000624354 CD3EP07766 207 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 FXYD7P58549 80 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 RNF183Q96D59 192 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 DPM3Q9P2X0 92 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 HECTD1Q9ULT8 2610 aa6.8□□□□□ -1.32
VCL-207ENST00000624354 APOMO95445 188 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 RPL7P18124 248 aaKnown RBP6.79□□□□□ -1.32
VCL-207ENST00000624354 AMTNQ6UX39 209 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 SYT8Q8NBV8 401 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 IGKV2-40A0A087WW87 121 aaPredicted RBP6.79□□□□□ -1.32
VCL-207ENST00000624354 IGKV2D-40P01614 121 aaPredicted RBP6.79□□□□□ -1.32
VCL-207ENST00000624354 GATA3P23771 443 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 HES1Q14469 280 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 TWIST1Q15672 202 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 CEND1Q8N111 149 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 PRR25Q96S07 402 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.79□□□□□ -1.32
VCL-207ENST00000624354 PGPEP1Q9NXJ5 209 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 DKK2Q9UBU2 259 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 ERG28Q9UKR5 140 aa6.79□□□□□ -1.32
VCL-207ENST00000624354 PRB1P04280 392 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 PSMG4Q5JS54 123 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 COX8CQ7Z4L0 72 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 NPBQ8NG41 125 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 TM2D2Q9BX73 214 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 C2CD3Q4AC94 2353 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 CELSR2Q9HCU4 2923 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 CELSR1Q9NYQ6 3014 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 IGLV11-55A0A075B6I3 123 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 K7EMI3 77 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 NDUFA3O95167 84 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 NPYP01303 97 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 EGR2P11161 476 aaPredicted RBP6.78□□□□□ -1.32
VCL-207ENST00000624354 KLRD1Q13241 179 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 FANCD2OSQ96PS1 177 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 TTTY13Q9BZ97 58 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 C21orf62Q9NYP8 219 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 NPIPB5A8MRT5 1133 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 SMKR1H3BMG3 65 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 SCGB2A1O75556 95 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 MT-ATP8P03928 68 aa6.78□□□□□ -1.32
VCL-207ENST00000624354 TRBV25-1A0A075B6N4 114 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 IGKV2D-26A0A0A0MRZ7 120 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 NDUFS7O75251 213 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 FOXI1Q12951 378 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 GAGE5Q13069 117 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 GAGE6Q13070 117 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 WFDC3Q8IUB2 231 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 Q8TAT8 98 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 CFHR4Q92496 578 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 ANAPC13Q9BS18 74 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 CDIP1Q9H305 208 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 PRO0461Q9UI25 63 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 PAX8Q06710 450 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 C12orf74Q32Q52 190 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 ZNF672Q499Z4 452 aaPredicted RBP6.77□□□□□ -1.33
VCL-207ENST00000624354 ZNF562Q6V9R5 426 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 OR11H6Q8NGC7 330 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 PIFOQ8TCI5 191 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 MAP1LC3AQ9H492 121 aa6.77□□□□□ -1.33
VCL-207ENST00000624354 SETD2Q9BYW2 2564 aaPredicted RBP6.77□□□□□ -1.33
VCL-207ENST00000624354 VPS13CQ709C8 3753 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 ORM1P02763 201 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 PPIFP30405 207 aaKnown RBP6.76□□□□□ -1.33
VCL-207ENST00000624354 Q8NA96 180 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 LY6G5BQ8NDX9 201 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 F8W735 103 aaPredicted RBP6.76□□□□□ -1.33
VCL-207ENST00000624354 IGLC6P0CF74 106 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 Q6ZUT4 128 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 C1QTNF4Q9BXJ3 329 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 MSRB2Q9Y3D2 182 aa6.76□□□□□ -1.33
VCL-207ENST00000624354 NCBP2LA6PVI3 153 aaKnown RBP6.76□□□□□ -1.33
VCL-207ENST00000624354 IGHV3-23P01764 117 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms