RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	TMEM14EP	Q6UXP3	125 aa		10.56	□□□□□ -0.72
CLK3-223	ENST00000568488	MGST2	Q99735	147 aa		10.56	□□□□□ -0.72
CLK3-223	ENST00000568488	FABP12	A6NFH5	140 aa		10.55	□□□□□ -0.72
CLK3-223	ENST00000568488	SFT2D2	O95562	160 aa		10.55	□□□□□ -0.72
CLK3-223	ENST00000568488	DIRAS2	Q96HU8	199 aa		10.55	□□□□□ -0.72
CLK3-223	ENST00000568488	ZNF492	Q9P255	531 aa		10.55	□□□□□ -0.72
CLK3-223	ENST00000568488	NDUFB4	O95168	129 aa		10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	GATA1	P15976	413 aa	Predicted RBP	10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	PPP1R1A	Q13522	171 aa		10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	MIC13	Q5XKP0	118 aa		10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	FAM122C	Q6P4D5	195 aa		10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	OR1L4	Q8NGR5	311 aa		10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	ATP6V0E2	Q8NHE4	81 aa		10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	NAA50	Q9GZZ1	169 aa	Known RBP	10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	AAMDC	Q9H7C9	122 aa		10.54	□□□□□ -0.72
CLK3-223	ENST00000568488	TRGV11	A0A075B6L2	103 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	RNF222	A6NCQ9	220 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	CAMLG	P49069	296 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	ZNF138	P52744	262 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	UBE2M	P61081	183 aa	Known RBP	10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	ARL16	Q0P5N6	197 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	TOR2A	Q5JU69	321 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	FAM159A	Q6UWV7	190 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	DAZ4	Q86SG3	579 aa	Known RBP	10.53	□□□□□ -0.72
CLK3-223	ENST00000568488		Q8TAT8	98 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	DAZ3	Q9NR90	486 aa	Known RBP	10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	COX11	Q9Y6N1	276 aa		10.53	□□□□□ -0.72
CLK3-223	ENST00000568488	GGTLC3	B5MD39	225 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	ATP6V1G2	O95670	118 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	SCGB1D2	O95969	90 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	RAB31	Q13636	194 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	C12orf45	Q8N5I9	185 aa	Predicted RBP	10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	SLC25A29	Q8N8R3	303 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	PRADC1	Q9BSG0	188 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	GTSF1L	Q9H1H1	148 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488	NAGK	Q9UJ70	344 aa		10.52	□□□□□ -0.73
CLK3-223	ENST00000568488		M0R2P5	195 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488	PYY	P10082	97 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488	BAK1	Q16611	211 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488		Q6ZRU5	148 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488	NRARP	Q7Z6K4	114 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488	MCFD2	Q8NI22	146 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488	PFDN5	Q99471	154 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488	GGACT	Q9BVM4	153 aa		10.51	□□□□□ -0.73
CLK3-223	ENST00000568488	IGKV2D-24	A0A075B6R9	120 aa		10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	FBLL1	A6NHQ2	334 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	FAU	P35544	74 aa	Known RBP	10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	PDE6H	Q13956	83 aa		10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	CTF1	Q16619	201 aa		10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	VWC2	Q2TAL6	325 aa		10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	RMI2	Q96E14	147 aa		10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	GPN1	Q9HCN4	374 aa	Predicted RBP	10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	RABL2A	Q9UBK7	228 aa	Predicted RBP	10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	RPH3AL	Q9UNE2	315 aa		10.5	□□□□□ -0.73
CLK3-223	ENST00000568488	GNRH2	O43555	120 aa		10.49	□□□□□ -0.73
CLK3-223	ENST00000568488	ZNF266	Q14584	549 aa		10.49	□□□□□ -0.73
CLK3-223	ENST00000568488	RHOH	Q15669	191 aa		10.49	□□□□□ -0.73
CLK3-223	ENST00000568488	TMEM14C	Q9P0S9	112 aa		10.49	□□□□□ -0.73
CLK3-223	ENST00000568488	RSL24D1	Q9UHA3	163 aa	Known RBP	10.49	□□□□□ -0.73
CLK3-223	ENST00000568488	IGHV3-73	A0A0B4J1V6	119 aa		10.48	□□□□□ -0.73
CLK3-223	ENST00000568488	TSC22D2	O75157	780 aa		10.48	□□□□□ -0.73
CLK3-223	ENST00000568488	PAXX	Q9BUH6	204 aa		10.48	□□□□□ -0.73
CLK3-223	ENST00000568488	DPH3P1	Q9H4G8	78 aa		10.48	□□□□□ -0.73
CLK3-223	ENST00000568488	TRAV8-1	A0A0A6YYK1	113 aa		10.47	□□□□□ -0.73
CLK3-223	ENST00000568488	C5orf51	A6NDU8	294 aa		10.47	□□□□□ -0.73
CLK3-223	ENST00000568488	GAS8-AS1	O95177	125 aa		10.47	□□□□□ -0.73
CLK3-223	ENST00000568488	DNAJC30	Q96LL9	226 aa		10.47	□□□□□ -0.73
CLK3-223	ENST00000568488	TRBV7-9	A0A0J9YWB2	115 aa		10.46	□□□□□ -0.73
CLK3-223	ENST00000568488	TRBV6-4	A0A1B0GX49	114 aa		10.46	□□□□□ -0.73
CLK3-223	ENST00000568488	OR10J4	P0C629	311 aa		10.46	□□□□□ -0.73
CLK3-223	ENST00000568488	TAS2R30	P59541	319 aa		10.46	□□□□□ -0.73
CLK3-223	ENST00000568488	SLC25A21	Q9BQT8	299 aa	Predicted RBP	10.46	□□□□□ -0.73
CLK3-223	ENST00000568488	SLC39A9	Q9NUM3	307 aa		10.46	□□□□□ -0.73
CLK3-223	ENST00000568488	GSKIP	Q9P0R6	139 aa		10.46	□□□□□ -0.73
CLK3-223	ENST00000568488		Q6AWC8	147 aa		10.45	□□□□□ -0.74
CLK3-223	ENST00000568488	DYNC2LI1	Q8TCX1	351 aa		10.45	□□□□□ -0.74
CLK3-223	ENST00000568488	SH3BGRL3	Q9H299	93 aa		10.45	□□□□□ -0.74
CLK3-223	ENST00000568488	C9orf170	A2RU37	121 aa		10.44	□□□□□ -0.74
CLK3-223	ENST00000568488	C7orf66	A4D0T2	115 aa		10.44	□□□□□ -0.74
CLK3-223	ENST00000568488	ODF1	Q14990	250 aa		10.44	□□□□□ -0.74
CLK3-223	ENST00000568488	TOMM5	Q8N4H5	51 aa		10.44	□□□□□ -0.74
CLK3-223	ENST00000568488	C20orf85	Q9H1P6	137 aa		10.44	□□□□□ -0.74
CLK3-223	ENST00000568488	URGCP-MRPS24	S4R325	110 aa		10.44	□□□□□ -0.74
CLK3-223	ENST00000568488	NBEAP1	P0C6P0	100 aa		10.43	□□□□□ -0.74
CLK3-223	ENST00000568488	CSN1S1	P47710	185 aa		10.43	□□□□□ -0.74
CLK3-223	ENST00000568488	RPL29	P47914	159 aa	Known RBP	10.43	□□□□□ -0.74
CLK3-223	ENST00000568488	BCAP31	P51572	246 aa		10.43	□□□□□ -0.74
CLK3-223	ENST00000568488	IAH1	Q2TAA2	248 aa	Predicted RBP	10.43	□□□□□ -0.74
CLK3-223	ENST00000568488	FFAR4	Q5NUL3	377 aa		10.43	□□□□□ -0.74
CLK3-223	ENST00000568488	CFAP126	Q5VTH2	177 aa		10.43	□□□□□ -0.74
CLK3-223	ENST00000568488	KLK12	Q9UKR0	248 aa		10.43	□□□□□ -0.74
CLK3-223	ENST00000568488		A0A0D9SG52	128 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488	GAGE12J	A6NER3	117 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488		L7N2F9	121 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488	CST7	O76096	145 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488	CAV2	P51636	162 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488	AP3S2	P59780	193 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488	VAMP2	P63027	116 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488	BAX	Q07812	192 aa		10.42	□□□□□ -0.74
CLK3-223	ENST00000568488	GAGE1	Q13065	139 aa		10.42	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms