RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 H2AFB2P0C5Z0 115 aa11.46□□□□□ -0.57
CLN3-211ENST00000564091 NHLH2Q02577 135 aa11.46□□□□□ -0.57
CLN3-211ENST00000564091 SLAQ13239 276 aa11.46□□□□□ -0.57
CLN3-211ENST00000564091 MUC21Q5SSG8 566 aa11.46□□□□□ -0.57
CLN3-211ENST00000564091 OR51M1Q9H341 326 aa11.46□□□□□ -0.57
CLN3-211ENST00000564091 DMBT1Q9UGM3 2413 aaPredicted RBP11.45□□□□□ -0.58
CLN3-211ENST00000564091 OR10J4P0C629 311 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 SFTA3P0C7M3 94 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 INAFM2P0DMQ5 153 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 ZNF138P52744 262 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 KRTAP10-1P60331 282 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 NEGR1Q7Z3B1 354 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 NFE4Q86UQ8 179 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 FXYD5Q96DB9 178 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 MRPL32Q9BYC8 188 aaKnown RBP11.45□□□□□ -0.58
CLN3-211ENST00000564091 MDFICQ9P1T7 246 aa11.45□□□□□ -0.58
CLN3-211ENST00000564091 TRGV4A0A0C4DH28 118 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 ZNF415Q09FC8 603 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 CDPF1Q6NVV7 123 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 WFDC10BQ8IUB3 73 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 OR5C1Q8NGR4 320 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 PHYHIPLQ96FC7 376 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 ZNF479Q96JC4 524 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 PAXXQ9BUH6 204 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 LY96Q9Y6Y9 160 aa11.44□□□□□ -0.58
CLN3-211ENST00000564091 TRAV9-2A0A087WT02 112 aa11.43□□□□□ -0.58
CLN3-211ENST00000564091 K7EQD1 137 aa11.43□□□□□ -0.58
CLN3-211ENST00000564091 DNAH8Q96JB1 4490 aa11.43□□□□□ -0.58
CLN3-211ENST00000564091 GYPEP15421 78 aa11.42□□□□□ -0.58
CLN3-211ENST00000564091 SRIP30626 198 aa11.42□□□□□ -0.58
CLN3-211ENST00000564091 RANP62826 216 aaKnown RBP11.42□□□□□ -0.58
CLN3-211ENST00000564091 MSRB1Q9NZV6 116 aa11.42□□□□□ -0.58
CLN3-211ENST00000564091 TRBV7-9A0A0J9YWB2 115 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 FAM240BA0A1B0GVZ2 78 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 SIX6O95475 246 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 IFNA5P01569 189 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 ZNF266Q14584 549 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 TMEM183BQ1AE95 376 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 Q5VSD8 79 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 TMEM183AQ8IXX5 376 aa11.41□□□□□ -0.58
CLN3-211ENST00000564091 OR7C2O60412 319 aa11.4□□□□□ -0.58
CLN3-211ENST00000564091 EVI2AP22794 236 aa11.4□□□□□ -0.58
CLN3-211ENST00000564091 CSN1S1P47710 185 aa11.4□□□□□ -0.58
CLN3-211ENST00000564091 IQCF2Q8IXL9 164 aa11.4□□□□□ -0.58
CLN3-211ENST00000564091 OR10G4Q8NGN3 311 aa11.4□□□□□ -0.58
CLN3-211ENST00000564091 PCNPQ8WW12 178 aaKnown RBP11.4□□□□□ -0.58
CLN3-211ENST00000564091 RASL10AQ92737 203 aa11.4□□□□□ -0.58
CLN3-211ENST00000564091 WDR61Q9GZS3 305 aaKnown RBP11.4□□□□□ -0.58
CLN3-211ENST00000564091 OR5AC2Q9NZP5 309 aa11.4□□□□□ -0.58
CLN3-211ENST00000564091 SMR3BP02814 79 aaPredicted RBP11.39□□□□□ -0.59
CLN3-211ENST00000564091 LRRC37A5PQ49AS3 106 aa11.39□□□□□ -0.59
CLN3-211ENST00000564091 FRZBQ92765 325 aa11.39□□□□□ -0.59
CLN3-211ENST00000564091 SLC25A31Q9H0C2 315 aa11.39□□□□□ -0.59
CLN3-211ENST00000564091 RBAKDNA6NC62 111 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 H0YIZ8 118 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 EIF3GO75821 320 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLN3-211ENST00000564091 HAMPP81172 84 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 Q6AWC8 147 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 FAM159AQ6UWV7 190 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 SPXQ9BT56 116 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 CCDC32Q9BV29 185 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 NAGKQ9UJ70 344 aa11.38□□□□□ -0.59
CLN3-211ENST00000564091 FLG2Q5D862 2391 aaPredicted RBP11.37□□□□□ -0.59
CLN3-211ENST00000564091 TRGV11A0A075B6L2 103 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 LOC100131303A0A0U1RQF7 123 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 DIRC3C9JPN6 131 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 GNRH2O43555 120 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 ORM1P02763 201 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 CRYGDP07320 174 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 GCSHP23434 173 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 UBE2L3P68036 154 aaKnown RBP11.37□□□□□ -0.59
CLN3-211ENST00000564091 HYLS1Q96M11 299 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 KCNIP2Q9NS61 270 aa11.37□□□□□ -0.59
CLN3-211ENST00000564091 K7EP13 123 aa11.36□□□□□ -0.59
CLN3-211ENST00000564091 OR4C5Q8NGB2 326 aa11.36□□□□□ -0.59
CLN3-211ENST00000564091 TXNDC17Q9BRA2 123 aa11.36□□□□□ -0.59
CLN3-211ENST00000564091 TRAV4A0A0B4J268 109 aa11.35□□□□□ -0.59
CLN3-211ENST00000564091 C9JCJ5 164 aa11.35□□□□□ -0.59
CLN3-211ENST00000564091 C17orf112F2Z3M2 114 aa11.35□□□□□ -0.59
CLN3-211ENST00000564091 MZT2BQ6NZ67 158 aa11.35□□□□□ -0.59
CLN3-211ENST00000564091 SRRM2Q9UQ35 2752 aaKnown RBP11.35□□□□□ -0.59
CLN3-211ENST00000564091 IGHV3-16A0A0C4DH30 117 aa11.34□□□□□ -0.59
CLN3-211ENST00000564091 FFAR4Q5NUL3 377 aa11.34□□□□□ -0.59
CLN3-211ENST00000564091 NMES1Q9C002 83 aa11.34□□□□□ -0.59
CLN3-211ENST00000564091 RPH3ALQ9UNE2 315 aa11.34□□□□□ -0.59
CLN3-211ENST00000564091 LENEPQ9Y5L5 61 aa11.34□□□□□ -0.59
CLN3-211ENST00000564091 M0R2P5 195 aa11.33□□□□□ -0.6
CLN3-211ENST00000564091 TDRG1Q3Y452 100 aa11.33□□□□□ -0.6
CLN3-211ENST00000564091 C10orf126Q8N4M7 172 aa11.33□□□□□ -0.6
CLN3-211ENST00000564091 NHLRC2Q8NBF2 726 aa11.33□□□□□ -0.6
CLN3-211ENST00000564091 ATP5SQ99766 215 aa11.33□□□□□ -0.6
CLN3-211ENST00000564091 IGLV5-52A0A0A0MRZ9 124 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 IGHV3-38A0A0C4DH36 116 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 LRCOL1A6NCL2 159 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 PGPA6NDG6 321 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 PSCAO43653 123 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 ASAH1Q13510 395 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 KHDC3LQ587J8 217 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 GOLT1AQ6ZVE7 132 aa11.32□□□□□ -0.6
CLN3-211ENST00000564091 TMED6Q8WW62 240 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms