RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 TMEM183BQ1AE95 376 aa8.4□□□□□ -1.06
VPS29-211ENST00000553128 MIC13Q5XKP0 118 aa8.4□□□□□ -1.06
VPS29-211ENST00000553128 SH2D6Q7Z4S9 175 aa8.4□□□□□ -1.06
VPS29-211ENST00000553128 TMEM183AQ8IXX5 376 aa8.4□□□□□ -1.06
VPS29-211ENST00000553128 SRRQ9GZT4 340 aa8.4□□□□□ -1.06
VPS29-211ENST00000553128 ZNF492Q9P255 531 aa8.4□□□□□ -1.06
VPS29-211ENST00000553128 IGLV2-11P01706 119 aa8.39□□□□□ -1.07
VPS29-211ENST00000553128 PYYP10082 97 aa8.39□□□□□ -1.07
VPS29-211ENST00000553128 ACOT6Q3I5F7 207 aaPredicted RBP8.39□□□□□ -1.07
VPS29-211ENST00000553128 TDRG1Q3Y452 100 aa8.39□□□□□ -1.07
VPS29-211ENST00000553128 TMEM78Q5T7P6 136 aa8.39□□□□□ -1.07
VPS29-211ENST00000553128 LELP1Q5T871 98 aa8.39□□□□□ -1.07
VPS29-211ENST00000553128 FAM122CQ6P4D5 195 aa8.39□□□□□ -1.07
VPS29-211ENST00000553128 DAZ4Q86SG3 579 aaKnown RBP8.39□□□□□ -1.07
VPS29-211ENST00000553128 DIRAS2Q96HU8 199 aa8.39□□□□□ -1.07
VPS29-211ENST00000553128 DAZ3Q9NR90 486 aaKnown RBP8.39□□□□□ -1.07
VPS29-211ENST00000553128 RNF222A6NCQ9 220 aa8.38□□□□□ -1.07
VPS29-211ENST00000553128 SLC25A29Q8N8R3 303 aa8.38□□□□□ -1.07
VPS29-211ENST00000553128 SPXQ9BT56 116 aa8.38□□□□□ -1.07
VPS29-211ENST00000553128 PRELID1Q9Y255 219 aa8.38□□□□□ -1.07
VPS29-211ENST00000553128 TIMM9Q9Y5J7 89 aa8.38□□□□□ -1.07
VPS29-211ENST00000553128 PFN1P07737 140 aaKnown RBP8.37□□□□□ -1.07
VPS29-211ENST00000553128 CAMLGP49069 296 aa8.37□□□□□ -1.07
VPS29-211ENST00000553128 UBE2MP61081 183 aaKnown RBP8.37□□□□□ -1.07
VPS29-211ENST00000553128 NRARPQ7Z6K4 114 aa8.37□□□□□ -1.07
VPS29-211ENST00000553128 LPAP08519 4548 aa8.37□□□□□ -1.07
VPS29-211ENST00000553128 TRAV8-3A0A0A6YYJ7 113 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 GNRH2O43555 120 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 SCGB1D2O95969 90 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 HIST1H1EP10412 219 aaKnown RBP8.36□□□□□ -1.07
VPS29-211ENST00000553128 ZNF138P52744 262 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 SPCS2Q15005 226 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 Q6ZRG5 221 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 Q8N976 141 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 TMEM14CQ9P0S9 112 aa8.36□□□□□ -1.07
VPS29-211ENST00000553128 TSC22D2O75157 780 aa8.35□□□□□ -1.07
VPS29-211ENST00000553128 PDE6HQ13956 83 aa8.35□□□□□ -1.07
VPS29-211ENST00000553128 ZNF266Q14584 549 aa8.35□□□□□ -1.07
VPS29-211ENST00000553128 OR1L4Q8NGR5 311 aa8.35□□□□□ -1.07
VPS29-211ENST00000553128 MCFD2Q8NI22 146 aa8.35□□□□□ -1.07
VPS29-211ENST00000553128 GGACTQ9BVM4 153 aa8.35□□□□□ -1.07
VPS29-211ENST00000553128 GTSF1LQ9H1H1 148 aa8.35□□□□□ -1.07
VPS29-211ENST00000553128 TRGV11A0A075B6L2 103 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 IGHV3-73A0A0B4J1V6 119 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 C7orf66A4D0T2 115 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 M0R2P5 195 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 BAK1Q16611 211 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 GCSAMLQ5JQS6 135 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 Q6AWC8 147 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 FAM159AQ6UWV7 190 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 DPPA3Q6W0C5 159 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 ATP6V0E2Q8NHE4 81 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 PFDN5Q99471 154 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 NAGKQ9UJ70 344 aa8.34□□□□□ -1.07
VPS29-211ENST00000553128 C9orf170A2RU37 121 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 FBLL1A6NHQ2 334 aaKnown RBP8.33□□□□□ -1.08
VPS29-211ENST00000553128 TAS2R30P59541 319 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 Q6ZRU5 148 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 TRIM63Q969Q1 353 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 SLC25A2Q9BXI2 301 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 AAMDCQ9H7C9 122 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 SLC39A9Q9NUM3 307 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 RSL24D1Q9UHA3 163 aaKnown RBP8.33□□□□□ -1.08
VPS29-211ENST00000553128 RPH3ALQ9UNE2 315 aa8.33□□□□□ -1.08
VPS29-211ENST00000553128 IGKV2D-24A0A075B6R9 120 aa8.32□□□□□ -1.08
VPS29-211ENST00000553128 TRBV7-9A0A0J9YWB2 115 aa8.32□□□□□ -1.08
VPS29-211ENST00000553128 FABP12A6NFH5 140 aa8.32□□□□□ -1.08
VPS29-211ENST00000553128 PANO1I0J062 215 aa8.32□□□□□ -1.08
VPS29-211ENST00000553128 GAS8-AS1O95177 125 aa8.32□□□□□ -1.08
VPS29-211ENST00000553128 PRADC1Q9BSG0 188 aa8.32□□□□□ -1.08
VPS29-211ENST00000553128 RABL2AQ9UBK7 228 aaPredicted RBP8.32□□□□□ -1.08
VPS29-211ENST00000553128 WDR83OSQ9Y284 106 aa8.32□□□□□ -1.08
VPS29-211ENST00000553128 GGTLC3B5MD39 225 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 TYMSP04818 313 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 FAUP35544 74 aaKnown RBP8.31□□□□□ -1.08
VPS29-211ENST00000553128 CAV2P51636 162 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 RHOHQ15669 191 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 IAH1Q2TAA2 248 aaPredicted RBP8.31□□□□□ -1.08
VPS29-211ENST00000553128 VWC2Q2TAL6 325 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 CFAP126Q5VTH2 177 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 C12orf45Q8N5I9 185 aaPredicted RBP8.31□□□□□ -1.08
VPS29-211ENST00000553128 PHYHIPLQ96FC7 376 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 FAM167A-AS1Q96KT0 104 aa8.31□□□□□ -1.08
VPS29-211ENST00000553128 SLC25A21Q9BQT8 299 aaPredicted RBP8.31□□□□□ -1.08
VPS29-211ENST00000553128 GPN1Q9HCN4 374 aaPredicted RBP8.31□□□□□ -1.08
VPS29-211ENST00000553128 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.31□□□□□ -1.08
VPS29-211ENST00000553128 TRBV6-4A0A1B0GX49 114 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 C5orf51A6NDU8 294 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 CST7O76096 145 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 MBPP02686 304 aaPredicted RBP8.3□□□□□ -1.08
VPS29-211ENST00000553128 RPL29P47914 159 aaKnown RBP8.3□□□□□ -1.08
VPS29-211ENST00000553128 RAB31Q13636 194 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 TOR2AQ5JU69 321 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 TOMM5Q8N4H5 51 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 PAXXQ9BUH6 204 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 GSKIPQ9P0R6 139 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 Q9UF83 564 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 COX11Q9Y6N1 276 aa8.3□□□□□ -1.08
VPS29-211ENST00000553128 MUC2Q02817 5179 aa8.29□□□□□ -1.08
VPS29-211ENST00000553128 UBE2L5PA0A1B0GUS4 154 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms