RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 FABP5P3A8MUU1 101 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 K7EP13 123 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 NMUP48645 174 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 RNF151Q2KHN1 245 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 C1orf122Q6ZSJ8 110 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 TMEM219Q86XT9 240 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 FAM110DQ8TAY7 271 aaPredicted RBP5.77□□□□□ -1.49
LIMA1-213ENST00000552720 AGPAT4-IT1Q9H0P7 198 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 ZANQ9Y493 2812 aa5.77□□□□□ -1.49
LIMA1-213ENST00000552720 TRAV8-2A0A0B4J237 113 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 TRAV26-2A0A0B4J265 109 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 SPRY2O43597 315 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 TNFRSF6BO95407 300 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 LEPP41159 167 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 MINOS1Q5TGZ0 78 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 BOD1L2Q8IYS8 172 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 TMEM190Q8WZ59 177 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 UBTD1Q9HAC8 227 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 MINOS1-NBL1R4GNA1 71 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 IGKV2D-26A0A0A0MRZ7 120 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 J3KRW8 73 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 DEFB1P60022 68 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 RPS20P60866 119 aaKnown RBP5.76□□□□□ -1.49
LIMA1-213ENST00000552720 KLRB1Q12918 225 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 DTX2Q86UW9 622 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 JMJD8Q96S16 334 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 MAP1LC3AQ9H492 121 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 CENPEQ02224 2701 aa5.76□□□□□ -1.49
LIMA1-213ENST00000552720 OOSP1A8MZH6 123 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 J3QL48 77 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 RAB37Q96AX2 223 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 CNFNQ9BYD5 112 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 BPESC1Q9GZL8 116 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 IGF1P05019 195 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 PRR9Q5T870 116 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 C8orf86Q6ZUL3 223 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 CST9LQ9H4G1 147 aa5.75□□□□□ -1.49
LIMA1-213ENST00000552720 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.75□□□□□ -1.49
LIMA1-213ENST00000552720 IGHV7-4-1A0A0J9YVY3 117 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 A1L4Q6 167 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 FBLL1A6NHQ2 334 aaKnown RBP5.74□□□□□ -1.49
LIMA1-213ENST00000552720 SCGB2A1O75556 95 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 GOSR1O95249 250 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 UBE2E1P51965 193 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 ADAMTSL5Q6ZMM2 481 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 TMEM158Q8WZ71 300 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 CENPVL3A0A0U1RRI6 287 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 GAGE12BA1L429 117 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 H3BUT2 72 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 K7EMI3 77 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 TRBV12-3P01733 135 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 PRSS1P07477 247 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 LMO4P61968 165 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 OR1N2Q8NGR9 330 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 DPF1Q92782 380 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 PEF1Q9UBV8 284 aaKnown RBP5.74□□□□□ -1.49
LIMA1-213ENST00000552720 HHLA3Q9XRX5 114 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 UFC1Q9Y3C8 167 aa5.74□□□□□ -1.49
LIMA1-213ENST00000552720 MUC4Q99102 2169 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 IGLV2-18A0A075B6J9 118 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 FCER1GP30273 86 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 SEC11AP67812 179 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 SRSF2Q01130 221 aaKnown RBP5.73□□□□□ -1.49
LIMA1-213ENST00000552720 LY6DQ14210 128 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 KIR3DS1Q14943 382 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 C20orf173Q96LM9 149 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 FOXC2Q99958 501 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 CSPG4Q6UVK1 2322 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 H3BVH4 76 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 C19orf84I3L1E1 186 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 CDKN1BP46527 198 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 OCIAD2Q56VL3 154 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 TMEM78Q5T7P6 136 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 UNQ9165/PRO28630Q6UXU0 137 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 BRD3OSQ6XYD6 125 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 GTSCR1Q86UQ5 136 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 C5orf56Q8N8D9 126 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 EEF1AKMT3Q96AZ1 226 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 SLC50A1Q9BRV3 221 aa5.73□□□□□ -1.49
LIMA1-213ENST00000552720 RBAKDNA6NC62 111 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 NPFFO15130 113 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 PPBPP02775 128 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 OR2K2Q8NGT1 345 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 METTL26Q96S19 204 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 MXRA5Q9NR99 2828 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 GAGE10A6NGK3 116 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 LINC01546A6NGU7 62 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 C9orf118A6NHY6 69 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 EFNA4P52798 201 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 HSD52Q0P140 79 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 Q8N8P6 123 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 NRACQ8N912 160 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 OR9G4Q8NGQ1 327 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 C16orf92Q96LL3 132 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 ZMAT4Q9H898 229 aa5.72□□□□□ -1.49
LIMA1-213ENST00000552720 NXT2Q9NPJ8 142 aaKnown RBP5.72□□□□□ -1.49
LIMA1-213ENST00000552720 IGKV3-7A0A075B6H7 116 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 TRAV40A0A0B4J280 105 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 A0A0G2JLM5 398 aa5.71□□□□□ -1.49
LIMA1-213ENST00000552720 TMEM8BA6NDV4 472 aa5.71□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms