RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 C6orf223Q8N319 242 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 RPP25LQ8N5L8 163 aaKnown RBP2.35□□□□□ -2.03
CD44-217ENST00000525348 OR9G1Q8NH87 305 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 FAM213BQ8TBF2 198 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 NT5CQ8TCD5 201 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 C10orf105Q8TEF2 133 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 BRK1Q8WUW1 75 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 SPACA5Q96QH8 159 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 PRSS27Q9BQR3 290 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 DPH3P1Q9H4G8 78 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 FIS1Q9Y3D6 152 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 TRAPPC1Q9Y5R8 145 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 SERP1Q9Y6X1 66 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 EML6Q6ZMW3 1958 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 DSPPQ9NZW4 1301 aa2.35□□□□□ -2.03
CD44-217ENST00000525348 LOC285556D6RIA3 1793 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 PLXNB2O15031 1838 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 LOC100131303A0A0U1RQF7 123 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 hADV29S1A0JD25 119 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 A6NIN4 97 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 C2orf70A6NJV1 201 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 IGLL5B9A064 214 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 F2Z2F3 143 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 H3BT86 120 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 LGALS9O00182 355 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 OR1I1O60431 355 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 PDCD6O75340 191 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 CPSF4O95639 269 aaKnown RBP2.34□□□□□ -2.03
CD44-217ENST00000525348 IGKCP01834 107 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 APOC2P02655 101 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 TCRAP04437 139 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 LGALS2P05162 132 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 SMIM13P0DJ93 91 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 COX6A1P12074 109 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 FAUP35544 74 aaKnown RBP2.34□□□□□ -2.03
CD44-217ENST00000525348 MYCNOSP40205 109 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 ZNF136P52737 540 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 DSCR4P56555 118 aaPredicted RBP2.34□□□□□ -2.03
CD44-217ENST00000525348 SNRPFP62306 86 aaKnown RBP2.34□□□□□ -2.03
CD44-217ENST00000525348 CCL20P78556 96 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 LGALS9BQ3B8N2 356 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 EBLN2Q6P2I7 272 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 DGAT2L6Q6ZPD8 337 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 WDR86Q86TI4 376 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 TEN1Q86WV5 123 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 RNF182Q8N6D2 247 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 C15orf53Q8NAA6 179 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 CCL17Q92583 94 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 KCNS1Q96KK3 526 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 LINC01600Q96MT4 127 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 OR2A5Q96R48 311 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 NMES1Q9C002 83 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 IMUPQ9GZP8 106 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 SLC39A9Q9NUM3 307 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 LAMTOR3Q9UHA4 124 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 HES2Q9Y543 173 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 PLXNA3P51805 1871 aa2.34□□□□□ -2.03
CD44-217ENST00000525348 BAZ2BQ9UIF8 2168 aaKnown RBP2.34□□□□□ -2.04
CD44-217ENST00000525348 PLXNB3Q9ULL4 1909 aa2.34□□□□□ -2.04
CD44-217ENST00000525348 LAMA2P24043 3122 aaKnown RBP2.34□□□□□ -2.04
CD44-217ENST00000525348 TRPM6Q9BX84 2022 aa2.34□□□□□ -2.04
CD44-217ENST00000525348 DYSFO75923 2080 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 SPRR5A0A1B0GTR4 108 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 MDFIC2A0A1B0GVS7 189 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 FAM24AA6NFZ4 105 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 F6UB75 175 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 INS-IGF2F8WCM5 200 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 ANGPTL7O43827 346 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 DEDDO75618 318 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 GYPBP06028 91 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 EFNA4P52798 201 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 UBE2G1P62253 170 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 SNRPGP62308 76 aaKnown RBP2.33□□□□□ -2.04
CD44-217ENST00000525348 HIST1H4AP62805 103 aaKnown RBP2.33□□□□□ -2.04
CD44-217ENST00000525348 CDK5R1Q15078 307 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 CST6Q15828 149 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 HES3Q5TGS1 186 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 C1orf140Q5VVS0 124 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 CEMP1Q6PRD7 247 aaPredicted RBP2.33□□□□□ -2.04
CD44-217ENST00000525348 TMEM136Q6ZRR5 245 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 Q6ZS49 121 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 KTN1-AS1Q86SY8 53 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 BPIFA4PQ86YQ2 179 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 AMN1Q8IY45 258 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 LINC00337Q8N6G1 96 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 CLDND2Q8NHS1 167 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 ZNF721Q8TF20 911 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 IL1F10Q8WWZ1 152 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 RAB37Q96AX2 223 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 SRXN1Q9BYN0 137 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 DEFB127Q9H1M4 99 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 CXCL16Q9H2A7 254 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 C11orf68Q9H3H3 251 aaKnown RBP2.33□□□□□ -2.04
CD44-217ENST00000525348 CMC2Q9NRP2 79 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 ANAPC10Q9UM13 185 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 HILPDAQ9Y5L2 63 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 CACNA1AO00555 2505 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 LAMA3Q16787 3333 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 RALGAPA2Q2PPJ7 1873 aa2.33□□□□□ -2.04
CD44-217ENST00000525348 REV3LO60673 3130 aa2.32□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 167.3 ms