RNA–Protein interactions for RNA: ENST00000512476.1

TRAPPC11-209, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best) BASIC

Gene TRAPPC11, Length 2,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-209ENST00000512476 MDC1Q14676 2089 aaKnown RBP4.4□□□□□ -1.7
TRAPPC11-209ENST00000512476 SPAG17Q6Q759 2223 aa4.4□□□□□ -1.7
TRAPPC11-209ENST00000512476 TRIOO75962 3097 aa4.4□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGHV5-51A0A0C4DH38 117 aa4.4□□□□□ -1.71
TRAPPC11-209ENST00000512476 Q6P435 159 aa4.4□□□□□ -1.71
TRAPPC11-209ENST00000512476 SMIM29Q86T20 159 aa4.4□□□□□ -1.71
TRAPPC11-209ENST00000512476 TMEM183AQ8IXX5 376 aa4.4□□□□□ -1.71
TRAPPC11-209ENST00000512476 HEXA-AS1Q9H8Q6 139 aa4.4□□□□□ -1.71
TRAPPC11-209ENST00000512476 NOP16Q9Y3C1 178 aaKnown RBP4.4□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGKV3D-20A0A0C4DH25 116 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 MCRIP1C9JLW8 97 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 TMEM262E9PQX1 116 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 TSPEAR-AS2P59090 65 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 ZNF876PQ49A33 203 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 C7orf65Q6ZTY9 151 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 TMUB2Q71RG4 321 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 CD177Q8N6Q3 437 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 LINC01006Q8NI28 216 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 POP5Q969H6 163 aaKnown RBP4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 DIRC1Q969H9 104 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 C20orf78Q9BR46 151 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 SLC35B3Q9H1N7 401 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 U3KQA8 63 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 NACAE9PAV3 2078 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 CUL9Q8IWT3 2517 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 M0R2P5 195 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 TRACP01848 142 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 VGLL1Q99990 258 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 COL6A3P12111 3177 aa4.39□□□□□ -1.71
TRAPPC11-209ENST00000512476 PCDH15Q96QU1 1955 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 PMS2P5A8MQ11 134 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 NANOS3P60323 173 aaKnown RBP4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 RNASE13Q5GAN3 156 aaKnown RBP4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 KRTAP3-1Q9BYR8 98 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 KIF26BQ2KJY2 2108 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 C3orf85A0A1B0GTC6 90 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 HIST1H2BKO60814 126 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGHV3-13P01766 116 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 HIST1H2BJP06899 126 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 HOXB6P17509 224 aaKnown RBP4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 LPAL2Q16609 132 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 TREML4Q6UXN2 200 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 ORMDL3Q8N138 153 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 OR5D16Q8NGK9 328 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 ZNF714Q96N38 554 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 OSTCQ9NRP0 149 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 TPRKBQ9Y3C4 175 aa4.38□□□□□ -1.71
TRAPPC11-209ENST00000512476 K7EP34 96 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 HMGN4O00479 90 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 HINT1P49773 126 aaPredicted RBP4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 Q0VG73 95 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 GFI1BQ5VTD9 330 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 C2orf66Q6UXQ4 117 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 SLC39A9Q9NUM3 307 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 SCN3AQ9NY46 2000 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 ADAMTS9Q9P2N4 1935 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGLV3-9A0A075B6K5 115 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 A6NED7 52 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 SOCS2O14508 198 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 GNGT2O14610 69 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 NDUFB6O95139 128 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 TCL1BO95988 128 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGHV3-11P01762 117 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 HMGN2P05204 90 aaKnown RBP4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 ZFP2Q6ZN57 461 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 CEND1Q8N111 149 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 Q8N1X5 172 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 SMCO4Q9NRQ5 59 aa4.37□□□□□ -1.71
TRAPPC11-209ENST00000512476 ZNF737O75373 536 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 HBDP02042 147 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 IFI6P09912 130 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 CCL3P10147 92 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 SLC25A4P12235 298 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGLV3-21P80748 117 aaPredicted RBP4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 RPL18Q07020 188 aaKnown RBP4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 FUT5Q11128 374 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 CDK5R1Q15078 307 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 NUP214P35658 2090 aaPredicted RBP4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGHV5-10-1A0A0J9YXX1 117 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 FSHBP01225 129 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGHA1P01876 353 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 MRPL51Q4U2R6 128 aaKnown RBP4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 SPRNQ5BIV9 151 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 OR2T2Q6IF00 324 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 PATE2Q6UY27 113 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 SERP1Q9Y6X1 66 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 CACNA1EQ15878 2313 aa4.36□□□□□ -1.71
TRAPPC11-209ENST00000512476 KNL1Q8NG31 2342 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 IGLC7A0M8Q6 106 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 A8MWP4 228 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 TRGV3P03979 118 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 TLX1NBP0CAT3 122 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 TMEM256Q8N2U0 113 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 CIRBP-AS1Q8TBR5 109 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 DNAH14Q0VDD8 3507 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 C19orf71A6NCJ1 209 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 SRRM5B3KS81 715 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 SOCS3O14543 225 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 DEFA4P12838 97 aa4.35□□□□□ -1.71
TRAPPC11-209ENST00000512476 EIF5AL1Q6IS14 154 aaKnown RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms