RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 TTC9CQ8N5M4 171 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 OR9G4Q8NGQ1 327 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 SRSF12Q8WXF0 261 aaKnown RBP6.13□□□□□ -1.43
SCN1A-207ENST00000507401 WWC2-AS2Q96NR7 200 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 SMAD5-AS1Q9Y6J3 95 aa6.13□□□□□ -1.43
SCN1A-207ENST00000507401 A0A0G2JRQ6 117 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 A0A1W2PRE2 83 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 NPIPB6E9PJ23 425 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 BMPR1BO00238 502 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 FCGR3BO75015 233 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 NUDT3O95989 172 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 IGLV1-51P01701 117 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 PSG1P11464 419 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 GCHFRP30047 84 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 SRIP30626 198 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 BRWD1-AS2P59051 145 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 RPL30P62888 115 aaKnown RBP6.12□□□□□ -1.43
SCN1A-207ENST00000507401 PSG9Q00887 426 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 TNXAQ16473 311 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 MAJINQ3KP22 176 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 UFSP1Q6NVU6 142 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 Q6ZRM9 215 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 NEGR1Q7Z3B1 354 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 OR8I2Q8N0Y5 310 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 NHLRC2Q8NBF2 726 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 TMEM167AQ8TBQ9 72 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 C18orf32Q8TCD1 76 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 SIGMAR1Q99720 223 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 MAP1LC3CQ9BXW4 147 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 VCX2Q9H322 139 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 NPVFQ9HCQ7 196 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 SIGLEC8Q9NYZ4 499 aa6.12□□□□□ -1.43
SCN1A-207ENST00000507401 TRBV20OR9-2A0A075B6H5 130 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 C7orf71A4D174 169 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 OR4C46A6NHA9 309 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 C9orf118A6NHY6 69 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 C2orf70A6NJV1 201 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 FAM223BA6NKX1 122 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 K7EP34 96 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 IGKV1-39P01597 117 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 IGKV1D-39P04432 117 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 SAA1P0DJI8 122 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-207ENST00000507401 HIST1H1EP10412 219 aaKnown RBP6.11□□□□□ -1.43
SCN1A-207ENST00000507401 GP9P14770 177 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 GPR183P32249 361 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 KIR2DS2P43631 304 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 ATP5G3P48201 142 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 KLK9Q2XQG4 91 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 ZNF585BQ52M93 769 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 AMMECR1LQ6DCA0 310 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 KRTAP5-3Q6L8H2 238 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 H2BFWTQ7Z2G1 175 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 BPIFA4PQ86YQ2 179 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 FAM223AQ8IWN6 122 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 OR4A16Q8NH70 328 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 OR4A5Q8NH83 315 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 RABAC1Q9UI14 185 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 KLK9Q9UKQ9 250 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 U3KQK5 164 aa6.11□□□□□ -1.43
SCN1A-207ENST00000507401 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.1□□□□□ -1.43
SCN1A-207ENST00000507401 A0A1B0GW15 77 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 A8MZ25 164 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 SYS1-DBNDD2H3BUS1 97 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 CRYGCP07315 174 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 ARL14EPLP0DKL9 152 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 COX8AP10176 69 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 ATP5G2Q06055 141 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 POU2AF1Q16633 256 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 MPV17L2Q567V2 206 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 IBA57Q5T440 356 aaKnown RBP6.1□□□□□ -1.43
SCN1A-207ENST00000507401 OR10AG1Q8NH19 301 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 ATP6V0BQ99437 205 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 MRPL32Q9BYC8 188 aaKnown RBP6.1□□□□□ -1.43
SCN1A-207ENST00000507401 KRTAP4-11Q9BYQ6 195 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 GFRA4Q9GZZ7 299 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 SCRT2Q9NQ03 307 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 TECRQ9NZ01 308 aaKnown RBP6.1□□□□□ -1.43
SCN1A-207ENST00000507401 ZNF257Q9Y2Q1 563 aa6.1□□□□□ -1.43
SCN1A-207ENST00000507401 YTHDF2Q9Y5A9 579 aaKnown RBP6.1□□□□□ -1.43
SCN1A-207ENST00000507401 TRAV34A0A0B4J273 112 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 NPIPB5A8MRT5 1133 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 K7EN84 100 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 RBMXL2O75526 392 aaKnown RBP6.09□□□□□ -1.43
SCN1A-207ENST00000507401 LEPROTL1O95214 131 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 CT45A10P0DMU9 189 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 NTF3P20783 257 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 RPL27AP46776 148 aaKnown RBP6.09□□□□□ -1.43
SCN1A-207ENST00000507401 SYNJ2BPP57105 145 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 RPL8P62917 257 aaKnown RBP6.09□□□□□ -1.43
SCN1A-207ENST00000507401 HSD52Q0P140 79 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 Q56UQ5 140 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 TMEM97Q5BJF2 176 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 CENPWQ5EE01 88 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 TEPPQ6URK8 271 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 VKORC1L1Q8N0U8 176 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 Q8N1Y9 231 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 ZNF114Q8NC26 417 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 OR2K2Q8NGT1 345 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 GATAD1Q8WUU5 269 aa6.09□□□□□ -1.43
SCN1A-207ENST00000507401 SRSF8Q9BRL6 282 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms