RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 CXorf65A6NEN9 183 aa14.26□□□□□ -0.13
COL9A3-204ENST00000463487 SPART-AS1P0CW21 52 aa14.26□□□□□ -0.13
COL9A3-204ENST00000463487 EMP1P54849 157 aa14.26□□□□□ -0.13
COL9A3-204ENST00000463487 SAPCD1Q5SSQ6 148 aa14.26□□□□□ -0.13
COL9A3-204ENST00000463487 TXNDC17Q9BRA2 123 aa14.26□□□□□ -0.13
COL9A3-204ENST00000463487 PSG8Q9UQ74 426 aa14.26□□□□□ -0.13
COL9A3-204ENST00000463487 C11orf94C9JXX5 98 aa14.25□□□□□ -0.13
COL9A3-204ENST00000463487 RGS13O14921 159 aa14.25□□□□□ -0.13
COL9A3-204ENST00000463487 TAGLN2P37802 199 aaKnown RBP14.25□□□□□ -0.13
COL9A3-204ENST00000463487 UBE2G1P62253 170 aa14.25□□□□□ -0.13
COL9A3-204ENST00000463487 TMEM263Q8WUH6 116 aaKnown RBP14.25□□□□□ -0.13
COL9A3-204ENST00000463487 ATP5G3P48201 142 aa14.24□□□□□ -0.13
COL9A3-204ENST00000463487 PRNTQ86SH4 94 aa14.24□□□□□ -0.13
COL9A3-204ENST00000463487 FMC1Q96HJ9 113 aa14.24□□□□□ -0.13
COL9A3-204ENST00000463487 ZNF324O75467 553 aaPredicted RBP14.23□□□□□ -0.13
COL9A3-204ENST00000463487 S100A9P06702 114 aaKnown RBP14.23□□□□□ -0.13
COL9A3-204ENST00000463487 AKR1C3P42330 323 aa14.23□□□□□ -0.13
COL9A3-204ENST00000463487 Q6AWC8 147 aa14.23□□□□□ -0.13
COL9A3-204ENST00000463487 ZNF680Q8NEM1 530 aa14.23□□□□□ -0.13
COL9A3-204ENST00000463487 SGK494Q96LW2 274 aa14.23□□□□□ -0.13
COL9A3-204ENST00000463487 LINC00467Q9BRT7 94 aa14.23□□□□□ -0.13
COL9A3-204ENST00000463487 TRAV21A0A0B4J279 112 aa14.22□□□□□ -0.13
COL9A3-204ENST00000463487 CBY3A6NI87 242 aa14.22□□□□□ -0.13
COL9A3-204ENST00000463487 PMS2P11Q13670 270 aa14.22□□□□□ -0.13
COL9A3-204ENST00000463487 PRR9Q5T870 116 aa14.22□□□□□ -0.13
COL9A3-204ENST00000463487 EIF4E3Q8N5X7 224 aaKnown RBP14.22□□□□□ -0.13
COL9A3-204ENST00000463487 NUPR2A6NF83 97 aa14.21□□□□□ -0.13
COL9A3-204ENST00000463487 LYRM9A8MSI8 78 aa14.21□□□□□ -0.13
COL9A3-204ENST00000463487 SNURFLB1AK76 121 aa14.21□□□□□ -0.13
COL9A3-204ENST00000463487 CCL20P78556 96 aa14.21□□□□□ -0.13
COL9A3-204ENST00000463487 SMUG1Q53HV7 270 aa14.21□□□□□ -0.13
COL9A3-204ENST00000463487 FAM159AQ6UWV7 190 aa14.21□□□□□ -0.13
COL9A3-204ENST00000463487 RNASE8Q8TDE3 154 aaKnown RBP14.21□□□□□ -0.13
COL9A3-204ENST00000463487 ZFP30Q9Y2G7 519 aa14.21□□□□□ -0.13
COL9A3-204ENST00000463487 TIMM8BQ9Y5J9 83 aaPredicted RBP14.21□□□□□ -0.13
COL9A3-204ENST00000463487 IGHV1OR15-1A0A075B7D0 117 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 TRAV34A0A0B4J273 112 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 IGLV2-11P01706 119 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 AZU1P20160 251 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 NANOS2P60321 138 aaKnown RBP14.2□□□□□ -0.14
COL9A3-204ENST00000463487 ANXA2RQ3ZCQ2 193 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 FAM222AQ5U5X8 452 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 ZFAND6Q6FIF0 208 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 Q86TA4 180 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 DKK2Q9UBU2 259 aa14.2□□□□□ -0.14
COL9A3-204ENST00000463487 PDE6DO43924 150 aa14.19□□□□□ -0.14
COL9A3-204ENST00000463487 BCL2P10415 239 aa14.19□□□□□ -0.14
COL9A3-204ENST00000463487 MEF2BQ02080 365 aaPredicted RBP14.19□□□□□ -0.14
COL9A3-204ENST00000463487 TVP23CQ96ET8 276 aa14.19□□□□□ -0.14
COL9A3-204ENST00000463487 LINC00479Q96M42 142 aa14.19□□□□□ -0.14
COL9A3-204ENST00000463487 VAX2Q9UIW0 290 aa14.19□□□□□ -0.14
COL9A3-204ENST00000463487 CELA1Q9UNI1 258 aa14.19□□□□□ -0.14
COL9A3-204ENST00000463487 KLF12Q9Y4X4 402 aa14.19□□□□□ -0.14
COL9A3-204ENST00000463487 TRBV6-1A0A0K0K1D8 114 aa14.18□□□□□ -0.14
COL9A3-204ENST00000463487 SCO2A0A1W2PP80 73 aa14.18□□□□□ -0.14
COL9A3-204ENST00000463487 GCGP01275 180 aa14.18□□□□□ -0.14
COL9A3-204ENST00000463487 TMEM183BQ1AE95 376 aa14.18□□□□□ -0.14
COL9A3-204ENST00000463487 CASC10Q5T4H9 136 aa14.18□□□□□ -0.14
COL9A3-204ENST00000463487 TEX261Q6UWH6 196 aa14.18□□□□□ -0.14
COL9A3-204ENST00000463487 PHLDA1Q8WV24 401 aaPredicted RBP14.18□□□□□ -0.14
COL9A3-204ENST00000463487 KCNS1Q96KK3 526 aa14.18□□□□□ -0.14
COL9A3-204ENST00000463487 KLK5Q9Y337 293 aaPredicted RBP14.18□□□□□ -0.14
COL9A3-204ENST00000463487 TRGV11A0A075B6L2 103 aa14.17□□□□□ -0.14
COL9A3-204ENST00000463487 PRM2P04554 102 aa14.17□□□□□ -0.14
COL9A3-204ENST00000463487 PFN1P07737 140 aaKnown RBP14.17□□□□□ -0.14
COL9A3-204ENST00000463487 DAD1P61803 113 aa14.17□□□□□ -0.14
COL9A3-204ENST00000463487 IBA57Q5T440 356 aaKnown RBP14.17□□□□□ -0.14
COL9A3-204ENST00000463487 C8orf49Q96NF6 230 aa14.17□□□□□ -0.14
COL9A3-204ENST00000463487 NAGKQ9UJ70 344 aa14.17□□□□□ -0.14
COL9A3-204ENST00000463487 ZNF415Q09FC8 603 aa14.16□□□□□ -0.14
COL9A3-204ENST00000463487 MUC21Q5SSG8 566 aa14.16□□□□□ -0.14
COL9A3-204ENST00000463487 SDF2L1Q9HCN8 221 aa14.16□□□□□ -0.14
COL9A3-204ENST00000463487 TRAV10A0A0B4J240 114 aa14.15□□□□□ -0.14
COL9A3-204ENST00000463487 CEMP1Q6PRD7 247 aaPredicted RBP14.15□□□□□ -0.14
COL9A3-204ENST00000463487 Q6ZTC4 211 aa14.15□□□□□ -0.14
COL9A3-204ENST00000463487 LYPD6BQ8NI32 183 aa14.15□□□□□ -0.14
COL9A3-204ENST00000463487 C2CD4CQ8TF44 421 aa14.15□□□□□ -0.14
COL9A3-204ENST00000463487 C11orf52Q96A22 123 aa14.15□□□□□ -0.14
COL9A3-204ENST00000463487 NOP10Q9NPE3 64 aaKnown RBP14.15□□□□□ -0.14
COL9A3-204ENST00000463487 PLAC8L1A1L4L8 177 aa14.14□□□□□ -0.15
COL9A3-204ENST00000463487 FABP5P3A8MUU1 101 aa14.14□□□□□ -0.15
COL9A3-204ENST00000463487 LTAP01374 205 aa14.14□□□□□ -0.15
COL9A3-204ENST00000463487 DAZ2Q13117 558 aaKnown RBP14.14□□□□□ -0.15
COL9A3-204ENST00000463487 C12orf74Q32Q52 190 aa14.14□□□□□ -0.15
COL9A3-204ENST00000463487 TDRG1Q3Y452 100 aa14.14□□□□□ -0.15
COL9A3-204ENST00000463487 DEFB130BP0DP73 79 aa14.13□□□□□ -0.15
COL9A3-204ENST00000463487 DEFB130AP0DP74 79 aa14.13□□□□□ -0.15
COL9A3-204ENST00000463487 GSN-AS1Q9NRJ2 163 aa14.13□□□□□ -0.15
COL9A3-204ENST00000463487 RPL35P42766 123 aaKnown RBP14.12□□□□□ -0.15
COL9A3-204ENST00000463487 TCL1AP56279 114 aa14.12□□□□□ -0.15
COL9A3-204ENST00000463487 FAM162BQ5T6X4 162 aa14.12□□□□□ -0.15
COL9A3-204ENST00000463487 ZNF767PQ75MW2 155 aa14.12□□□□□ -0.15
COL9A3-204ENST00000463487 COX8CQ7Z4L0 72 aa14.12□□□□□ -0.15
COL9A3-204ENST00000463487 BAGE2Q86Y30 109 aa14.12□□□□□ -0.15
COL9A3-204ENST00000463487 TMEM183AQ8IXX5 376 aa14.12□□□□□ -0.15
COL9A3-204ENST00000463487 MED9Q9NWA0 146 aa14.12□□□□□ -0.15
COL9A3-204ENST00000463487 DEFB131BA0A096LNP1 70 aa14.11□□□□□ -0.15
COL9A3-204ENST00000463487 RBFOX3A6NFN3 312 aa14.11□□□□□ -0.15
COL9A3-204ENST00000463487 ZNF80P51504 273 aaPredicted RBP14.11□□□□□ -0.15
COL9A3-204ENST00000463487 Q6ZQT7 251 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms