RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TMEM218A2RU14 115 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 A8MTW9 85 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 M0R2Z0 102 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 GCGP01275 180 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 SRSF3P84103 164 aaKnown RBP7.43□□□□□ -1.22
CD44-207ENST00000425428 PNRC1Q12796 327 aaPredicted RBP7.43□□□□□ -1.22
CD44-207ENST00000425428 PRR27Q6MZM9 219 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 FAM159AQ6UWV7 190 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 RCHY1Q96PM5 261 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 LINC01587Q99440 93 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 DERL1Q9BUN8 251 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 XKRY2A2RUG3 117 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 KRBOX1C9JBD0 128 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 IGLV2-11P01706 119 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 PRB2P02812 416 aaPredicted RBP7.43□□□□□ -1.22
CD44-207ENST00000425428 PFN1P07737 140 aaKnown RBP7.43□□□□□ -1.22
CD44-207ENST00000425428 FRMD6-AS1P0C7T7 363 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 C15orf54Q8N8G6 183 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 TVP23CQ96ET8 276 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 KCNS1Q96KK3 526 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 SEC11CQ9BY50 192 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 ZMAT4Q9H898 229 aa7.43□□□□□ -1.22
CD44-207ENST00000425428 TRAV12-2A0A075B6T6 113 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 IGHV3OR16-12A0A075B7B8 117 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 TRAV12-3A0A0B4J271 114 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 RBMY1BA6NDE4 496 aaKnown RBP7.42□□□□□ -1.22
CD44-207ENST00000425428 RBMY1EA6NEQ0 496 aaKnown RBP7.42□□□□□ -1.22
CD44-207ENST00000425428 KLLNB2CW77 178 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 H7BYZ3 331 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 RBMY1DP0C7P1 496 aaKnown RBP7.42□□□□□ -1.22
CD44-207ENST00000425428 ADIRFQ15847 76 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 AMTNQ6UX39 209 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 Q6ZWC4 215 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 NHLRC2Q8NBF2 726 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 NAGKQ9UJ70 344 aa7.42□□□□□ -1.22
CD44-207ENST00000425428 CMYA5Q8N3K9 4069 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 K7EIL1 84 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 M0R036 132 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 P01737 135 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 ORM1P02763 201 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 ERVFC1-1P60608 527 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 DEFA6Q01524 100 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 OR5I1Q13606 314 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 FAM19A4Q96LR4 140 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 C8orf49Q96NF6 230 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 PYGO2Q9BRQ0 406 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 HTN1P15515 57 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 RPS20P60866 119 aaKnown RBP7.41□□□□□ -1.22
CD44-207ENST00000425428 BTN1A1Q13410 526 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 GFI1BQ5VTD9 330 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 Q6AWC8 147 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 ZFAND2AQ8N6M9 145 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 OCC1Q8TAD7 63 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 ZC2HC1AQ96GY0 325 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 SDF2L1Q9HCN8 221 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 NOTCH1P46531 2555 aa7.41□□□□□ -1.22
CD44-207ENST00000425428 SMIM9A6NGZ8 99 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 CBY3A6NI87 242 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 C9JQL5 133 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 PPP1R2P9O14990 202 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 SPRY2O43597 315 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 S100A4P26447 101 aaKnown RBP7.4□□□□□ -1.23
CD44-207ENST00000425428 IBA57Q5T440 356 aaKnown RBP7.4□□□□□ -1.23
CD44-207ENST00000425428 COX8CQ7Z4L0 72 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 SPATA25Q9BR10 227 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 TP53TG1Q9Y2A0 90 aa7.4□□□□□ -1.23
CD44-207ENST00000425428 TRGV11A0A075B6L2 103 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 IGHV1OR15-1A0A075B7D0 117 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 TMEM189A5PLL7 270 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 B4DEV8 164 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 SH2D1AO60880 128 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 MT-ND4LP03901 98 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 RRN3P1Q2M238 152 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 DEFB135Q30KP9 77 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 LINC01551Q86U37 167 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 SLC7A5P1Q8MH63 180 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 MLST8Q9BVC4 326 aa7.39□□□□□ -1.23
CD44-207ENST00000425428 PGPEP1LA6NFU8 196 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 ZNF705GA8MUZ8 300 aaPredicted RBP7.38□□□□□ -1.23
CD44-207ENST00000425428 GATCO43716 136 aaKnown RBP7.38□□□□□ -1.23
CD44-207ENST00000425428 SNAPINO95295 136 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 LINC00322Q6ZN03 302 aaPredicted RBP7.38□□□□□ -1.23
CD44-207ENST00000425428 SVBPQ8N300 66 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 TRBV20OR9-2A0A075B6H5 130 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 SNURFLB1AK76 121 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 APOC3P02656 99 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 RPL23P62829 140 aaKnown RBP7.38□□□□□ -1.23
CD44-207ENST00000425428 RPL19P84098 196 aaKnown RBP7.38□□□□□ -1.23
CD44-207ENST00000425428 MUC21Q5SSG8 566 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 OR2D3Q8NGH3 330 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 OR10G8Q8NGN5 311 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 OR11H2Q8NH07 326 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 RNF183Q96D59 192 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 SFRP2Q96HF1 295 aa7.38□□□□□ -1.23
CD44-207ENST00000425428 A8MWL6 223 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 CRXO43186 299 aaPredicted RBP7.37□□□□□ -1.23
CD44-207ENST00000425428 NHLRC4P0CG21 123 aaPredicted RBP7.37□□□□□ -1.23
CD44-207ENST00000425428 MIFP14174 115 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 ASIPP42127 132 aa7.37□□□□□ -1.23
CD44-207ENST00000425428 ZNF415Q09FC8 603 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms