RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 OR11H12B2RN74 326 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 PRAC2D3DTV9 90 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 RNF223E7ERA6 249 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 F8VRH5 84 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 PSMB2P49721 201 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 UBE2D1P51668 147 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 UBE2D3P61077 147 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 UBE2D2P62837 147 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 ADIPOQQ15848 244 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 ZNF672Q499Z4 452 aaPredicted RBP5.24□□□□□ -1.57
VPS39-202ENST00000348544 PLA2G2CQ5R387 149 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 DYNAPQ8N1N2 210 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 OR11H1Q8NG94 326 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 OR11H2Q8NH07 326 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 IGFBPL1Q8WX77 278 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 PLEKHB2Q96CS7 222 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 FAM215AQ9Y5M1 114 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 NCOR1O75376 2440 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 PKDREJQ9NTG1 2253 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 FABP5P3A8MUU1 101 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 BUB1B-PAK6H3BSN5 160 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 LAMTOR5O43504 91 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 CNIH1O95406 144 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 IL17RELQ6ZVW7 336 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 CSMD1Q96PZ7 3565 aa5.24□□□□□ -1.57
VPS39-202ENST00000348544 LOC107984156A0A0G2JMH3 177 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 H7C1H1 209 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 TMEM78Q5T7P6 136 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 C1orf122Q6ZSJ8 110 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 TEN1Q86WV5 123 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 ARL17AQ8IVW1 177 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 PPDPFLQ8WWR9 84 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 FANCD2OSQ96PS1 177 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 KIR2DL4Q99706 377 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 TNRC18O15417 2968 aaPredicted RBP5.23□□□□□ -1.57
VPS39-202ENST00000348544 IGHV3OR16-8A0A075B7F1 116 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 TRAV12-1A0A0B4J245 112 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 CD7P09564 240 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 Q6ZQT7 251 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 NUP37Q8NFH4 326 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 PRADC1Q9BSG0 188 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 RAB1BQ9H0U4 201 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 RP1L1Q8IWN7 2480 aaPredicted RBP5.23□□□□□ -1.57
VPS39-202ENST00000348544 TACC2O95359 2948 aa5.23□□□□□ -1.57
VPS39-202ENST00000348544 TRAV17A0A0B4J275 112 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 IGHV7-4-1A0A0J9YVY3 117 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 TCL1BO95988 128 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 IGHV3-23P01764 117 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 NHLRC4P0CG21 123 aaPredicted RBP5.22□□□□□ -1.57
VPS39-202ENST00000348544 ZNF883P0CG24 379 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 CD59P13987 128 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 COX6B1P14854 86 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 RPL7P18124 248 aaKnown RBP5.22□□□□□ -1.57
VPS39-202ENST00000348544 COX7A1P24310 79 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 IGFL2Q6UWQ7 119 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 NEXN-AS1Q8NBZ9 246 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 SRSF8Q9BRL6 282 aaKnown RBP5.22□□□□□ -1.57
VPS39-202ENST00000348544 ARRDC1-AS1Q9H2J1 176 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 KLK15Q9H2R5 256 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 UFC1Q9Y3C8 167 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 ZGRF1Q86YA3 2104 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 FAM90A27PA6NNH2 459 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 SBSPONQ8IVN8 264 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 RNF182Q8N6D2 247 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 CITED1Q99966 193 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 ANAPC13Q9BS18 74 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 RAXQ9Y2V3 346 aa5.22□□□□□ -1.57
VPS39-202ENST00000348544 IGLV11-55A0A075B6I3 123 aa5.21□□□□□ -1.57
VPS39-202ENST00000348544 ZNF815PA8K554 130 aa5.21□□□□□ -1.57
VPS39-202ENST00000348544 TIMM23O14925 209 aa5.21□□□□□ -1.57
VPS39-202ENST00000348544 TGFAP01135 160 aa5.21□□□□□ -1.57
VPS39-202ENST00000348544 RASL10AQ92737 203 aa5.21□□□□□ -1.57
VPS39-202ENST00000348544 KAAG1Q9UBP8 84 aa5.21□□□□□ -1.57
VPS39-202ENST00000348544 LY6LH3BQJ8 138 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 SLC25A16P16260 332 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 MFAP4P55083 255 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 ASCL5Q7RTU5 278 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 NDUFA11Q86Y39 141 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 ANKRD29Q8N6D5 301 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 KLHL30-AS1Q8NEE0 82 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 VKORC1Q9BQB6 163 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 SMIM2Q9BVW6 85 aa5.21□□□□□ -1.58
VPS39-202ENST00000348544 IGHV3-35A0A0C4DH35 117 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 B5MCH6 92 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 ZNF688P0C7X2 276 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 C1orf210Q8IVY1 113 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 BAALCQ8WXS3 180 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 TOMM6Q96B49 74 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 SCGB3A1Q96QR1 104 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 MSRB2Q9Y3D2 182 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 CTSGP08311 255 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 NDPQ00604 133 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 BSPH1Q075Z2 132 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 GAGE5Q13069 117 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 GAGE6Q13070 117 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 ZFAND6Q6FIF0 208 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 SCGB1D4Q6XE38 83 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 OR11H6Q8NGC7 330 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 AJUBAQ96IF1 538 aa5.2□□□□□ -1.58
VPS39-202ENST00000348544 AGPAT4-IT1Q9H0P7 198 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms