RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 TRAV12-2A0A075B6T6 113 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 AMBPP02760 352 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 S100A9P06702 114 aaKnown RBP11.35□□□□□ -0.59
CLN3-201ENST00000333496 RHOBP62745 196 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 RAB24Q969Q5 203 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 FUT9Q9Y231 359 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 A0A1W2PPV4 95 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 TMEM250H0YL14 139 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 M0R3E3 92 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 EIF3GO75821 320 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLN3-201ENST00000333496 PRM2P04554 102 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 MEF2BQ02080 365 aaPredicted RBP11.35□□□□□ -0.59
CLN3-201ENST00000333496 PDE6HQ13956 83 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 ELOBQ15370 118 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 BLNKQ8WV28 456 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 ZNF503Q96F45 646 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 CTDSP1Q9GZU7 261 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 OR51M1Q9H341 326 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 KMT2AQ03164 3969 aa11.35□□□□□ -0.59
CLN3-201ENST00000333496 FGF8P55075 233 aaPredicted RBP11.34□□□□□ -0.59
CLN3-201ENST00000333496 FABP9Q0Z7S8 132 aa11.34□□□□□ -0.59
CLN3-201ENST00000333496 KIR3DS1Q14943 382 aa11.34□□□□□ -0.59
CLN3-201ENST00000333496 Q6ZTC4 211 aa11.34□□□□□ -0.59
CLN3-201ENST00000333496 FXYD5Q96DB9 178 aa11.34□□□□□ -0.59
CLN3-201ENST00000333496 KLK5Q9Y337 293 aaPredicted RBP11.34□□□□□ -0.59
CLN3-201ENST00000333496 HMGB3O15347 200 aaKnown RBP11.33□□□□□ -0.6
CLN3-201ENST00000333496 INSP01308 110 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 OR10J4P0C629 311 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 NBEAP1P0C6P0 100 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 RPS10P46783 165 aaKnown RBP11.33□□□□□ -0.6
CLN3-201ENST00000333496 C12orf74Q32Q52 190 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 EXOC3-AS1Q8N2X6 119 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 OR10J6PQ8NGY7 276 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 MRPL53Q96EL3 112 aaKnown RBP11.33□□□□□ -0.6
CLN3-201ENST00000333496 PAXXQ9BUH6 204 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 SDF2L1Q9HCN8 221 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 NAT8Q9UHE5 227 aa11.33□□□□□ -0.6
CLN3-201ENST00000333496 ZNF727A8MUV8 499 aa11.32□□□□□ -0.6
CLN3-201ENST00000333496 CDKN1BP46527 198 aa11.32□□□□□ -0.6
CLN3-201ENST00000333496 EMP1P54849 157 aa11.32□□□□□ -0.6
CLN3-201ENST00000333496 TMEM208Q9BTX3 173 aa11.32□□□□□ -0.6
CLN3-201ENST00000333496 PPP1R14DQ9NXH3 145 aa11.32□□□□□ -0.6
CLN3-201ENST00000333496 TMEM189A5PLL7 270 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 NPIPB6E9PJ23 425 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 OR7C2O60412 319 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 CT45A10P0DMU9 189 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 RRN3P1Q2M238 152 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 PCP4L1A6NKN8 68 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 ZNF705GA8MUZ8 300 aaPredicted RBP11.31□□□□□ -0.6
CLN3-201ENST00000333496 C11orf94C9JXX5 98 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 STAG3L2P0CL84 134 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 STAG3L3P0CL85 134 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 ZNF674Q2M3X9 581 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 LINC00476Q8WZB0 136 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 SMIM7Q9BQ49 75 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 DKK2Q9UBU2 259 aa11.31□□□□□ -0.6
CLN3-201ENST00000333496 CXCL1P09341 107 aa11.3□□□□□ -0.6
CLN3-201ENST00000333496 ERCC8Q13216 396 aa11.3□□□□□ -0.6
CLN3-201ENST00000333496 YTHDF2Q9Y5A9 579 aaKnown RBP11.3□□□□□ -0.6
CLN3-201ENST00000333496 TRBV24-1A0A075B6N3 115 aa11.29□□□□□ -0.6
CLN3-201ENST00000333496 SPART-AS1P0CW21 52 aa11.29□□□□□ -0.6
CLN3-201ENST00000333496 AZU1P20160 251 aa11.29□□□□□ -0.6
CLN3-201ENST00000333496 FAM222AQ5U5X8 452 aa11.29□□□□□ -0.6
CLN3-201ENST00000333496 TMPRSS5Q9H3S3 457 aa11.29□□□□□ -0.6
CLN3-201ENST00000333496 AAMDCQ9H7C9 122 aa11.29□□□□□ -0.6
CLN3-201ENST00000333496 TRAV10A0A0B4J240 114 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 PLAC8L1A1L4L8 177 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 CXorf1O96002 111 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 ARL14EPLP0DKL9 152 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 TMEM241Q24JQ0 296 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 GFI1BQ5VTD9 330 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 TMEM256Q8N2U0 113 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 FAM210BQ96KR6 192 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 ODF3Q96PU9 254 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 LINC01587Q99440 93 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 URGCP-MRPS24S4R325 110 aa11.28□□□□□ -0.6
CLN3-201ENST00000333496 TGIF2-C20orf24A0A0A6YYL0 155 aa11.27□□□□□ -0.6
CLN3-201ENST00000333496 TAS2R45P59539 299 aa11.27□□□□□ -0.6
CLN3-201ENST00000333496 RANP62826 216 aaKnown RBP11.27□□□□□ -0.6
CLN3-201ENST00000333496 UBE2L3P68036 154 aaKnown RBP11.27□□□□□ -0.6
CLN3-201ENST00000333496 TXNDC17Q9BRA2 123 aa11.27□□□□□ -0.6
CLN3-201ENST00000333496 AGPAT4-IT1Q9H0P7 198 aa11.27□□□□□ -0.6
CLN3-201ENST00000333496 VPS13DQ5THJ4 4388 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 IGKV2-40A0A087WW87 121 aaPredicted RBP11.27□□□□□ -0.61
CLN3-201ENST00000333496 IGLL5B9A064 214 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 J3KRW8 73 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 PDE6DO43924 150 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 IGKV2D-40P01614 121 aaPredicted RBP11.27□□□□□ -0.61
CLN3-201ENST00000333496 HOXA5P20719 270 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 TSPOP30536 169 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 C9orf47Q6ZRZ4 202 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 FAM19A4Q96LR4 140 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 LINC00477Q96M19 166 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 C20orf144Q9BQM9 153 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 PARLQ9H300 379 aa11.27□□□□□ -0.61
CLN3-201ENST00000333496 DEFB131BA0A096LNP1 70 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 LY6G6CO95867 125 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 S100PP25815 95 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 GCHFRP30047 84 aa11.26□□□□□ -0.61
CLN3-201ENST00000333496 TAS2R60P59551 318 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms