RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 A0A1W2PPZ6 126 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 ZNF785A8K8V0 405 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 HLA-DMBP28068 263 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 EXOC3-AS1Q8N2X6 119 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 TMEM75Q8N9X5 138 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 GAFA1Q96PS6 74 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 PRORYQ9H606 182 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 NXT2Q9NPJ8 142 aaKnown RBP5.16□□□□□ -1.58
ZNF540-201ENST00000316433 CDH23Q9H251 3354 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 ZNF407Q9C0G0 2248 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 IGKV1OR2-108A0A075B7D4 117 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 IGLV2-23P01705 113 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 PFN2P35080 140 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 HES3Q5TGS1 186 aa5.16□□□□□ -1.58
ZNF540-201ENST00000316433 SRSF12Q8WXF0 261 aaKnown RBP5.16□□□□□ -1.58
ZNF540-201ENST00000316433 PGPA6NDG6 321 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 SAA2P0DJI9 122 aaPredicted RBP5.15□□□□□ -1.58
ZNF540-201ENST00000316433 PLNP26678 52 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 PDE6HQ13956 83 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 MRGPRG-AS1Q2M3A8 158 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 LINC01620Q4KN68 170 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 MRPL51Q4U2R6 128 aaKnown RBP5.15□□□□□ -1.58
ZNF540-201ENST00000316433 SPINK14Q6IE38 97 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 CNFNQ9BYD5 112 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 CYSTM1Q9H1C7 97 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 OTORQ9NRC9 128 aa5.15□□□□□ -1.58
ZNF540-201ENST00000316433 TRAV13-1A0A0B4J241 112 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 J3QQQ9 107 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 GP9P14770 177 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 ZNF134P52741 427 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 LINC00205P59089 165 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 METRNQ9UJH8 293 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 USF3Q68DE3 2245 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 UNC80Q8N2C7 3258 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 TRBV10-2A0A0K0K1G8 114 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 FAM236DA0A1B0GTK5 79 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 A0A1W2PNU3 283 aaPredicted RBP5.15□□□□□ -1.59
ZNF540-201ENST00000316433 FCGR3BO75015 233 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 NDUFA3O95167 84 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 CFC1BP0CG36 223 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 CFC1P0CG37 223 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 FAM236CP0DP71 79 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 CKS2P33552 79 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 ATXN8Q156A1 80 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 TMEM170BQ5T4T1 132 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 RNF7Q9UBF6 113 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 PRO1854Q9UHT4 67 aa5.15□□□□□ -1.59
ZNF540-201ENST00000316433 F5P12259 2224 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 CD59P13987 128 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 HERVK_113P61574 105 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 C1orf195Q5TG92 126 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 SCGB1D4Q6XE38 83 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 C9orf85Q96MD7 179 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 SLC25A39Q9BZJ4 359 aaPredicted RBP5.14□□□□□ -1.59
ZNF540-201ENST00000316433 TRAV3A0A0B4J244 114 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 SMKR1H3BMG3 65 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 LY6LH3BQJ8 138 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 Q86TA4 180 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 SIRPDQ9H106 197 aa5.14□□□□□ -1.59
ZNF540-201ENST00000316433 CGB1A6NKQ9 187 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 ZNF815PA8K554 130 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 COX7A2P2O60397 106 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 TCRAP04437 139 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 P0DMU3 169 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 FAM231AP0DMU4 169 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 FAM231CP0DMU5 169 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 ERHP84090 104 aaKnown RBP5.13□□□□□ -1.59
ZNF540-201ENST00000316433 FAM27E3Q08E93 113 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 FAM53AQ6NSI3 398 aaPredicted RBP5.13□□□□□ -1.59
ZNF540-201ENST00000316433 VKORC1L1Q8N0U8 176 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 SHANK2-AS3Q9BTD1 123 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 REV3LO60673 3130 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 CABIN1Q9Y6J0 2220 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 PI4KAP42356 2102 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 DNAH14Q0VDD8 3507 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 TRAV41A0A0B4J266 112 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 A0A1W2PRX2 142 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 ATOX1O00244 68 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 SLC25A16P16260 332 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 ZNF22P17026 224 aaPredicted RBP5.13□□□□□ -1.59
ZNF540-201ENST00000316433 DEFB121Q5J5C9 76 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 C10orf113Q5VZT2 155 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 C1orf229Q6ZS94 237 aaPredicted RBP5.13□□□□□ -1.59
ZNF540-201ENST00000316433 GOLT1AQ6ZVE7 132 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 Q71RC1 249 aaPredicted RBP5.13□□□□□ -1.59
ZNF540-201ENST00000316433 Q8N8P6 123 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 PLEKHB2Q96CS7 222 aa5.13□□□□□ -1.59
ZNF540-201ENST00000316433 C2orf82Q6UX34 121 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 AGPAT4-IT1Q9H0P7 198 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 TPSG1Q9NRR2 321 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 ASCC3Q8N3C0 2202 aaKnown RBP5.12□□□□□ -1.59
ZNF540-201ENST00000316433 KLRB1Q12918 225 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 PATE2Q6UY27 113 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 C10orf105Q8TEF2 133 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 WNT9BO14905 357 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 NBR2O15453 112 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 IGLV2-11P01706 119 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 METTL26Q96S19 204 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 GNG12Q9UBI6 72 aa5.12□□□□□ -1.59
ZNF540-201ENST00000316433 DOCK7Q96N67 2140 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms