RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ATP5G2Q06055 141 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 AP1S3Q96PC3 154 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 HIF1ANQ9NWT6 349 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 C11orf21Q9P2W6 132 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 MED13LQ71F56 2210 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 PRSS1P07477 247 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 PCP2Q8IVA1 136 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 C5orf56Q8N8D9 126 aa14.38□□□□□ -0.11
CPSF3-201ENST00000238112 LMO4P61968 165 aa14.37□□□□□ -0.11
CPSF3-201ENST00000238112 IGF2RP11717 2491 aa14.37□□□□□ -0.11
CPSF3-201ENST00000238112 Q8N8P6 123 aa14.37□□□□□ -0.11
CPSF3-201ENST00000238112 OR2K2Q8NGT1 345 aa14.37□□□□□ -0.11
CPSF3-201ENST00000238112 H3BRM9 83 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 TRGV3P03979 118 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 CDKN1BP46527 198 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 ODF1Q14990 250 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 PSMG4Q5JS54 123 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 TMEM158Q8WZ71 300 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 CST9LQ9H4G1 147 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 ADAMTSL5Q6ZMM2 481 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 C9orf47Q6ZRZ4 202 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 C16orf92Q96LL3 132 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 UFC1Q9Y3C8 167 aa14.36□□□□□ -0.11
CPSF3-201ENST00000238112 C21orf62-AS1Q17RA5 79 aa14.35□□□□□ -0.11
CPSF3-201ENST00000238112 TMEM219Q86XT9 240 aa14.35□□□□□ -0.11
CPSF3-201ENST00000238112 U3KQE9 123 aa14.35□□□□□ -0.11
CPSF3-201ENST00000238112 ATRXP46100 2492 aa14.35□□□□□ -0.11
CPSF3-201ENST00000238112 IGHV7-4-1A0A0J9YVY3 117 aa14.35□□□□□ -0.11
CPSF3-201ENST00000238112 RNF151Q2KHN1 245 aa14.35□□□□□ -0.11
CPSF3-201ENST00000238112 PIFOQ8TCI5 191 aa14.35□□□□□ -0.11
CPSF3-201ENST00000238112 TRAV41A0A0B4J266 112 aa14.34□□□□□ -0.11
CPSF3-201ENST00000238112 GAGE10A6NGK3 116 aa14.34□□□□□ -0.11
CPSF3-201ENST00000238112 C9orf118A6NHY6 69 aa14.34□□□□□ -0.11
CPSF3-201ENST00000238112 KIR3DS1Q14943 382 aa14.34□□□□□ -0.11
CPSF3-201ENST00000238112 SPANXN1Q5VSR9 72 aa14.34□□□□□ -0.11
CPSF3-201ENST00000238112 GAGE12BA1L429 117 aa14.33□□□□□ -0.11
CPSF3-201ENST00000238112 ATP5LO75964 103 aa14.33□□□□□ -0.11
CPSF3-201ENST00000238112 IGKCP01834 107 aa14.33□□□□□ -0.11
CPSF3-201ENST00000238112 FOXC2Q99958 501 aa14.33□□□□□ -0.11
CPSF3-201ENST00000238112 ZMAT4Q9H898 229 aa14.33□□□□□ -0.11
CPSF3-201ENST00000238112 MOB4Q9Y3A3 225 aa14.33□□□□□ -0.11
CPSF3-201ENST00000238112 IGLV2-18A0A075B6J9 118 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 FAM223BA6NKX1 122 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 GTF2H5Q6ZYL4 71 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 FAM223AQ8IWN6 122 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 SMPXQ9UHP9 88 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 CACNA1BQ00975 2339 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 TRAV26-2A0A0B4J265 109 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 SMIM17P0DL12 118 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 OCIAD2Q56VL3 154 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 ATP6V0BQ99437 205 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 LINC00527Q9UJ94 153 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 HHLA3Q9XRX5 114 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 SVEP1Q4LDE5 3571 aa14.32□□□□□ -0.12
CPSF3-201ENST00000238112 LAGE3Q14657 143 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 C9orf139Q6ZV77 190 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 SPTBN1Q01082 2364 aaKnown RBP14.31□□□□□ -0.12
CPSF3-201ENST00000238112 COL6A6A6NMZ7 2263 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 IGHV3OR16-10A0A075B7F0 116 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 H3BUT2 72 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 DPM2O94777 84 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 ARL3P36405 182 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 Q6ZQT7 251 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 NRACQ8N912 160 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 MYOZ3Q8TDC0 251 aa14.31□□□□□ -0.12
CPSF3-201ENST00000238112 IGHV4-4A0A075B6R2 117 aa14.3□□□□□ -0.12
CPSF3-201ENST00000238112 H3BVH4 76 aa14.3□□□□□ -0.12
CPSF3-201ENST00000238112 GLMPQ8WWB7 406 aa14.3□□□□□ -0.12
CPSF3-201ENST00000238112 ASH1LQ9NR48 2969 aaKnown RBP14.3□□□□□ -0.12
CPSF3-201ENST00000238112 IGKV2D-26A0A0A0MRZ7 120 aa14.3□□□□□ -0.12
CPSF3-201ENST00000238112 A0A0G2JLM5 398 aa14.3□□□□□ -0.12
CPSF3-201ENST00000238112 PRSS47A8MTI9 375 aa14.3□□□□□ -0.12
CPSF3-201ENST00000238112 RAB37Q96AX2 223 aa14.29□□□□□ -0.12
CPSF3-201ENST00000238112 JMJD8Q96S16 334 aa14.29□□□□□ -0.12
CPSF3-201ENST00000238112 LENEPQ9Y5L5 61 aa14.29□□□□□ -0.12
CPSF3-201ENST00000238112 TMEM8BA6NDV4 472 aa14.29□□□□□ -0.12
CPSF3-201ENST00000238112 J3KRW8 73 aa14.28□□□□□ -0.12
CPSF3-201ENST00000238112 C19orf54Q5BKX5 351 aa14.28□□□□□ -0.12
CPSF3-201ENST00000238112 PRR9Q5T870 116 aa14.28□□□□□ -0.12
CPSF3-201ENST00000238112 ZC2HC1BQ5TFG8 222 aa14.28□□□□□ -0.12
CPSF3-201ENST00000238112 GTSCR1Q86UQ5 136 aa14.28□□□□□ -0.12
CPSF3-201ENST00000238112 ITLN2Q8WWU7 325 aaPredicted RBP14.28□□□□□ -0.12
CPSF3-201ENST00000238112 C20orf173Q96LM9 149 aa14.28□□□□□ -0.12
CPSF3-201ENST00000238112 NAA38Q9BRA0 125 aaKnown RBP14.28□□□□□ -0.12
CPSF3-201ENST00000238112 TM4SF20Q53R12 229 aa14.27□□□□□ -0.12
CPSF3-201ENST00000238112 TMEM160Q9NX00 188 aa14.27□□□□□ -0.12
CPSF3-201ENST00000238112 HIGD1BQ9P298 99 aa14.27□□□□□ -0.12
CPSF3-201ENST00000238112 SRSF1Q07955 248 aaKnown RBP eCLIP14.27□□□□□ -0.13
CPSF3-201ENST00000238112 UFSP1Q6NVU6 142 aa14.27□□□□□ -0.13
CPSF3-201ENST00000238112 OR10J6PQ8NGY7 276 aa14.27□□□□□ -0.13
CPSF3-201ENST00000238112 MRAP2Q96G30 205 aa14.27□□□□□ -0.13
CPSF3-201ENST00000238112 LINC00477Q96M19 166 aa14.27□□□□□ -0.13
CPSF3-201ENST00000238112 TTTY13Q9BZ97 58 aa14.27□□□□□ -0.13
CPSF3-201ENST00000238112 K7EP34 96 aa14.26□□□□□ -0.13
CPSF3-201ENST00000238112 GCSHP23434 173 aa14.26□□□□□ -0.13
CPSF3-201ENST00000238112 CRIP2P52943 208 aaPredicted RBP14.26□□□□□ -0.13
CPSF3-201ENST00000238112 LY6DQ14210 128 aa14.26□□□□□ -0.13
CPSF3-201ENST00000238112 IGHV1-69DA0A0B4J2H0 117 aa14.26□□□□□ -0.13
CPSF3-201ENST00000238112 IGHV1-69P01742 117 aa14.26□□□□□ -0.13
CPSF3-201ENST00000238112 UNQ9165/PRO28630Q6UXU0 137 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms